PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G277400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 251aa MW: 27169.5 Da PI: 7.0864 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55 | 1.5e-17 | 117 | 182 | 22 | 83 |
H.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 22 faeeh....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 +ae+h + + + ++ l +ed g++W+++++y+ +s++yvlt+GW+ Fv+++gL +gD+v F+ Sevir.7G277400.1.p 117 HAEKHfpplD-EAAPPVLLAFEDvAGGKVWRFRYSYWSSSQSYVLTRGWSCFVREKGLVAGDTVAFS 182 4666666531.3345678999996677***************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.466 | 32 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-5 | 32 | 60 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS50863 | 11.025 | 101 | 203 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-22 | 103 | 184 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-19 | 104 | 183 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.84E-11 | 106 | 181 | No hit | No description |
SMART | SM01019 | 1.2E-8 | 107 | 193 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-14 | 130 | 182 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MSTSTQEVEQ LDWMDGDDDA AAASPRAQSS SRYKGVVPQP NARWGAQIYE RHARVWLGTM 60 AFLAARPKAE VVDMLRKHTY DDELRQALRS GGGGDHALAL VPRVALFEKA VTPSDLHAEK 120 HFPPLDEAAP PVLLAFEDVA GGKVWRFRYS YWSSSQSYVL TRGWSCFVRE KGLVAGDTVA 180 FSQAQAAVSS STDDGEVDVK RRMFIECRKR KRNDGGAGHG DDCCADGGAR VVRLFGANIA 240 AAAIGASCMC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-28 | 105 | 185 | 12 | 104 | DNA-binding protein RAV1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 199 | 211 | KRRMFIECRKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G277400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095812 | 2e-31 | FP095812.1 Phyllostachys edulis cDNA clone: bphyem125h21, full insert sequence. | |||
GenBank | FP096835 | 2e-31 | FP096835.1 Phyllostachys edulis cDNA clone: bphyem207b07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806570.1 | 1e-124 | AP2/ERF and B3 domain-containing protein Os01g0141000-like | ||||
Swissprot | Q9AWS7 | 5e-66 | Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
TrEMBL | A0A368S008 | 1e-151 | A0A368S008_SETIT; Uncharacterized protein | ||||
STRING | Si012228m | 1e-142 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 6e-52 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G277400.1.p |