 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sevir.7G274400.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
AP2 |
| Protein Properties |
Length: 468aa MW: 48886.8 Da PI: 6.9643 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.7G274400.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53.5 | 5.8e-17 | 114 | 163 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Sevir.7G274400.1.p 114 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 163
78*******************......55************************997 PP
|
| 2 | AP2 | 46.3 | 1e-14 | 206 | 256 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ + +k+++lg f+t+eeAa+a+++a+ k +g
Sevir.7G274400.1.p 206 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 256
89********.7******5553..2.26**********************99776 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010073 | Biological Process | meristem maintenance |
| GO:0010093 | Biological Process | specification of floral organ identity |
| GO:0048316 | Biological Process | seed development |
| GO:0048481 | Biological Process | plant ovule development |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 468 aa
Download sequence Send
to blast |
MWDLNDSPAA EAAPPSPSAD DSGASSSSAA APVEIPDDAD DDSAAAAAAA DAVVTRQFFP 60
APAAAPGAAG SARAGWLRLS AAAPPPASNG ATASGAAGAA ASKKSRRGPR SRSSQYRGVT 120
FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF NLEDYEDDMK 180
QMGNLSKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE 240
EEAARAYDRA AIKCNGKDAV TNFDPSIYAE ELEPAAATTG GGDEHNLDLS LGSSAGSKRG 300
SLDGGGAGDD ETSDQRVPMA FDLDWQTAAA RSTKAKFDAS SKQPQMPPSL QGAHHLPFSP 360
RHQQFLSNEG DPGTAGGLSL AIGGAGAVGG HWPPQLLQQQ QRLLHGWGNG GGTSWPLPPH 420
PPPPTNAAAA AAATAAAASS RFPPYVTTQG PTSWVQKNGF HSLARPT*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT056188 | 0.0 | BT056188.1 Zea mays full-length cDNA clone ZM_BFb0070P06 mRNA, complete cds. |
