PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G274400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 468aa    MW: 48886.8 Da    PI: 6.9643
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G274400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-17114163155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sevir.7G274400.1.p 114 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 163
                         78*******************......55************************997 PP
2AP246.31e-14206256155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  Sevir.7G274400.1.p 206 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 256
                         89********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-9114163IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-16114172IPR016177DNA-binding domain
SMARTSM003801.9E-31115177IPR001471AP2/ERF domain
PROSITE profilePS5103217.596115171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-17115171IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-18206266IPR016177DNA-binding domain
PfamPF008471.1E-10206256IPR001471AP2/ERF domain
CDDcd000182.56E-25206266No hitNo description
SMARTSM003801.2E-33207270IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-17207264IPR001471AP2/ERF domain
PROSITE profilePS5103216.489207264IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MWDLNDSPAA EAAPPSPSAD DSGASSSSAA APVEIPDDAD DDSAAAAAAA DAVVTRQFFP  60
APAAAPGAAG SARAGWLRLS AAAPPPASNG ATASGAAGAA ASKKSRRGPR SRSSQYRGVT  120
FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF NLEDYEDDMK  180
QMGNLSKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE  240
EEAARAYDRA AIKCNGKDAV TNFDPSIYAE ELEPAAATTG GGDEHNLDLS LGSSAGSKRG  300
SLDGGGAGDD ETSDQRVPMA FDLDWQTAAA RSTKAKFDAS SKQPQMPPSL QGAHHLPFSP  360
RHQQFLSNEG DPGTAGGLSL AIGGAGAVGG HWPPQLLQQQ QRLLHGWGNG GGTSWPLPPH  420
PPPPTNAAAA AAATAAAASS RFPPYVTTQG PTSWVQKNGF HSLARPT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G274400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0561880.0BT056188.1 Zea mays full-length cDNA clone ZM_BFb0070P06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977036.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotB8AVJ90.0APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A368S0650.0A0A368S065_SETIT; Uncharacterized protein
STRINGSi012635m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-91AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]