PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G274400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | AP2 | ||||||||
Protein Properties | Length: 468aa MW: 48886.8 Da PI: 6.9643 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 5.8e-17 | 114 | 163 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Sevir.7G274400.1.p 114 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 163 78*******************......55************************997 PP | |||||||
2 | AP2 | 46.3 | 1e-14 | 206 | 256 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+eeAa+a+++a+ k +g Sevir.7G274400.1.p 206 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 256 89********.7******5553..2.26**********************99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.3E-9 | 114 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-16 | 114 | 172 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-31 | 115 | 177 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.596 | 115 | 171 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-17 | 115 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-18 | 206 | 266 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-10 | 206 | 256 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.56E-25 | 206 | 266 | No hit | No description |
SMART | SM00380 | 1.2E-33 | 207 | 270 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-17 | 207 | 264 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.489 | 207 | 264 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MWDLNDSPAA EAAPPSPSAD DSGASSSSAA APVEIPDDAD DDSAAAAAAA DAVVTRQFFP 60 APAAAPGAAG SARAGWLRLS AAAPPPASNG ATASGAAGAA ASKKSRRGPR SRSSQYRGVT 120 FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF NLEDYEDDMK 180 QMGNLSKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE 240 EEAARAYDRA AIKCNGKDAV TNFDPSIYAE ELEPAAATTG GGDEHNLDLS LGSSAGSKRG 300 SLDGGGAGDD ETSDQRVPMA FDLDWQTAAA RSTKAKFDAS SKQPQMPPSL QGAHHLPFSP 360 RHQQFLSNEG DPGTAGGLSL AIGGAGAVGG HWPPQLLQQQ QRLLHGWGNG GGTSWPLPPH 420 PPPPTNAAAA AAATAAAASS RFPPYVTTQG PTSWVQKNGF HSLARPT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G274400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT056188 | 0.0 | BT056188.1 Zea mays full-length cDNA clone ZM_BFb0070P06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977036.1 | 0.0 | AP2-like ethylene-responsive transcription factor TOE3 isoform X2 | ||||
Swissprot | B8AVJ9 | 0.0 | APL25_ORYSI; APETALA2-like protein 5 | ||||
TrEMBL | A0A368S065 | 0.0 | A0A368S065_SETIT; Uncharacterized protein | ||||
STRING | Si012635m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5514 | 36 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-91 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G274400.1.p |
Publications ? help Back to Top | |||
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