PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G262500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 440aa    MW: 46160.7 Da    PI: 6.9659
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G262500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.53.3e-053293661254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ +++  L++l+ +      +K + a++L +++eYIk L
  Sevir.7G262500.1.p 329 RKEKLGDRITALQQLVAPF-----GKTDTASVLHETIEYIKFL 366
                         677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.668317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-11327384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.53E-5327370No hitNo description
Gene3DG3DSA:4.10.280.106.6E-8327375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MGDHAEMLHA APAVVYTGGG AGAAPHGGWW TAASVPTATC STELAGFGTW SSALQAATSY  60
DMAVEGAKAK SATTASSESP GNNSSVTFQE PTGVADPVGI SAAVHQQPLA GYADWTHPYM  120
SSGATLHGFL QDGHQDMSSR TEQSPMDAST LMNPSSNNLA LQVQGHQQEH QLLSSFGSDL  180
LLSPTTPYGL QSSLLRSLLE PAAKPALPGF QQYDQYGQQI CQQASPAAAR FAPGAIREPL  240
QFTNDAPFWN SSAAGFGVPA AAAVPDQASV RSAVKPSPAP RAATLTLKTV LEGVGESSSI  300
ISKKKASGEP AFKKPRLETP SPLPTFKVRK EKLGDRITAL QQLVAPFGKT DTASVLHETI  360
EYIKFLHDQV GVLSAPYLKN GHHHQLPHLK SSSPEKSKDS HGEISLKGRG LCLVPISSTF  420
AVASEVPVDF WTPFGANFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G262500.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9751931e-131EU975193.1 Zea mays clone 484008 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976935.10.0transcription factor bHLH112
TrEMBLK3Y7E80.0K3Y7E8_SETIT; Uncharacterized protein
STRINGSi010139m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.31e-48bHLH family protein