PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.7G232200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 373aa MW: 39453.4 Da PI: 4.8372 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1.1e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++++G +W++ ++ g+ R++k+c++rw +yl Sevir.7G232200.1.p 16 KGSWTPEEDMRLIAYIQKYGHANWRALPKQAGLLRCGKSCRLRWINYL 63 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.5e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l Sevir.7G232200.1.p 69 RGNFTAEEEETIIKLHGLLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.195 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.1E-30 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-24 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.45E-11 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.829 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 9.9E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-26 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.04E-11 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 373 aa Download sequence Send to blast |
MGKGRAPCCA KVGLNKGSWT PEEDMRLIAY IQKYGHANWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDLKRG NFTAEEEETI IKLHGLLGNK WSKIAACLPG RTDNEIKNVW NTHLKKRVSP 120 GAEERGGAAG SKKKKKAAGA GVPAAAAPSP SPSSSTTTAT TNCSSGDSGE QQSKASKDEP 180 GDELGLEKLE IIPMLDDPAC FGFDMLVDQI PDPYCPDVSV PTSPCASSTS PPAPARPSVD 240 ELLDLPEIDI DHELWSIIDG VGGDGAGAGA VAAGTAPAPC QSNATEPNAA ASTTSHGTEW 300 WLEDLEKELG LWGPMEDYQY PMGPQCPVAH PDPLPAMVDD PVSCYFQAGP APAMLHEPGY 360 SSVVTSSNQM GY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 5e-29 | 14 | 118 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 5e-29 | 14 | 118 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 114 | 135 | KKRVSPGAEERGGAAGSKKKKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00144 | DAP | Transfer from AT1G16490 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.7G232200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT070145 | 1e-174 | BT070145.1 Zea mays full-length cDNA clone ZM_BFc0138F01 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976660.1 | 0.0 | myb-related protein Zm1 | ||||
Swissprot | P20024 | 1e-108 | MYB1_MAIZE; Myb-related protein Zm1 | ||||
TrEMBL | K3Y843 | 0.0 | K3Y843_SETIT; Uncharacterized protein | ||||
STRING | Si010384m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G79180.1 | 7e-69 | myb domain protein 63 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.7G232200.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|