PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G215400.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 506aa    MW: 54508.4 Da    PI: 6.1052
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G215400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.25e-22101157157
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         +++ +++t++q+++Le++F+++++p++++r+eL+k+lgL+ rqVk+WFqNrR+++k+
  Sevir.7G215400.3.p 101 KKRYHRHTPQQIHQLEAVFKECPHPDEKQRAELSKRLGLEPRQVKFWFQNRRTQMKN 157
                         678899************************************************995 PP
2START117.61.8e-373104962166
                         HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
               START   2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                         la +a++elvk+a+ +ep+Wv s+        e +n +e+ ++f++  +     + +ea+r+sg+v  ++a lve ++d   +W+ ++   
  Sevir.7G215400.3.p 310 LAMRAMDELVKMAQMNEPLWVPSVsspgsptmETLNWKEYSKTFSPCVGlkpigFVSEASRESGIVAIDSAALVEFFMDEV-RWSDMFSci 399
                         6789******************9999888888888888888888775559*******************************.********* PP

                         ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECT CS
               START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksn 159
                           ka+t+e is g      gal lm+aelq+lsplvp R+++f+R++ ql +g+w++vdvS+d  +  +     + +++lpSg+++++ +n
  Sevir.7G215400.3.p 400 vaKASTIEEISAGavgsrdGALLLMQAELQVLSPLVPrREVTFLRFCNQLAEGVWAVVDVSIDGLERDQCLVTNMNCRRLPSGCVVQEIPN 490
                         ***************************************************************98887778889999************** PP

                         CEEEEEE CS
               START 160 ghskvtw 166
                         g +kv++
  Sevir.7G215400.3.p 491 G-CKVHH 496
                         *.**986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-2487160IPR009057Homeodomain-like
SuperFamilySSF466895.43E-2289158IPR009057Homeodomain-like
PROSITE profilePS5007118.39898158IPR001356Homeobox domain
SMARTSM003893.0E-2299162IPR001356Homeobox domain
CDDcd000861.56E-21100159No hitNo description
PfamPF000461.8E-19101156IPR001356Homeobox domain
PRINTSPR000313.7E-5129138IPR000047Helix-turn-helix motif
PROSITE patternPS000270133156IPR017970Homeobox, conserved site
PRINTSPR000313.7E-5138154IPR000047Helix-turn-helix motif
PROSITE profilePS5084831.489300494IPR002913START domain
SuperFamilySSF559613.85E-23301497No hitNo description
CDDcd088754.08E-81304495No hitNo description
SMARTSM002342.8E-9309505IPR002913START domain
PfamPF018525.1E-30310496IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MSFGDLLGGA GDAAGAPYPP YGVFASSPAL PLAVADAGRR RGGSGERAGS VAHGGGNAKD  60
APEADDGSRS PIGDHIDVVL VCGGGEDDDE DGEAANPRKR KKRYHRHTPQ QIHQLEAVFK  120
ECPHPDEKQR AELSKRLGLE PRQVKFWFQN RRTQMKNQME RHENALLKQE NDKLRAENLS  180
IRGAMRDTVC GGCGGPALLG DMSLEEHHLR LENARLRDEL TRVCALTAKF IGKPISTMAL  240
APVQQLHPMP GSSLDLAVTC VGSVPPSTMP VSTISELAGS VSSQMGTVIT PMVTAPSAMT  300
SIDKSMFVQL AMRAMDELVK MAQMNEPLWV PSVSSPGSPT METLNWKEYS KTFSPCVGLK  360
PIGFVSEASR ESGIVAIDSA ALVEFFMDEV RWSDMFSCIV AKASTIEEIS AGAVGSRDGA  420
LLLMQAELQV LSPLVPRREV TFLRFCNQLA EGVWAVVDVS IDGLERDQCL VTNMNCRRLP  480
SGCVVQEIPN GCKVHHSNSL PLLVL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196102PRKRKKR
297101RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G215400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978185.10.0homeobox-leucine zipper protein ROC4
SwissprotQ7Y0V90.0ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4
TrEMBLK3Y5A80.0K3Y5A8_SETIT; Uncharacterized protein
STRINGSi009396m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.11e-146homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wei J, et al.
    GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7.
    Plant Sci., 2016. 252: p. 133-143
    [PMID:27717449]
  3. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]