PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G212900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 608aa MW: 62555.7 Da PI: 8.5699 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.5e-05 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Sevir.7G212900.1.p 92 FVCEVCNKGFQREQNLQLHRRGH 114 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.0009 | 169 | 191 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Sevir.7G212900.1.p 169 WKCDKCSKRYAVQSDWKAHSKIC 191 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.43E-7 | 91 | 114 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.4E-6 | 91 | 114 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0041 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 4.0E-5 | 92 | 114 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 11.094 | 92 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.1E-4 | 157 | 190 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.43E-7 | 164 | 189 | No hit | No description |
SMART | SM00355 | 140 | 169 | 189 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MASNSSAAAA AAFFGIRDGD QQDQIKPLIS PQQQQLAAAL PGVAGAAPAP ATGQGAPAAA 60 AQPPPKKKRT LPDPDAEVIA LSPKTLLATN RFVCEVCNKG FQREQNLQLH RRGHNLPWKL 120 KQKNPLQAQR RRVYLCPEPT CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV 180 QSDWKAHSKI CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQESARLPPT SLSSLTGHLY 240 GATNAGNMAL SLSQVGSNLT STLQDGGHHH HHHHHHPSPE LLRLAATAGG GGSSIAARLD 300 HLLSPASGAS AFRPPPQAPP SSAAFFLNAA AAAAGQDFGD DGGNGPHSFM QTKPFHGLMQ 360 LPDLQGNGAG GPGGSAPGLF NLGFFANNGN SSGSSHEHAS QGLMNNDQFS GGAGGGGGSE 420 ASAAGIFGGN FVGGGDHVPT PGLYGDQSTM LPQMSATALL QKAAQMGATS SANGAASMFR 480 GFVGSSPHGR PATPHMEQSE ANLNDLMNSL AGGGVGAAGI FGGSNGGGGG GGGAGMFDPR 540 QLCDMEHHEV KFGQGGGDMT RDFLGVGGGG IVRGISTPRG DHQSSSDMSS LEAEMKSASS 600 FNGGRMP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-34 | 165 | 234 | 3 | 70 | Zinc finger protein JACKDAW |
5b3h_F | 1e-34 | 165 | 234 | 3 | 70 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G212900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY754866 | 0.0 | AY754866.1 Zea mays INDETERMINATE-related protein 9 mRNA, complete cds. | |||
GenBank | BT064120 | 0.0 | BT064120.1 Zea mays full-length cDNA clone ZM_BFc0139A11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976512.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | K3Y5Z4 | 0.0 | K3Y5Z4_SETIT; Uncharacterized protein | ||||
STRING | Si009633m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1733 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02670.1 | 1e-105 | indeterminate(ID)-domain 12 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G212900.1.p |