PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sevir.7G203600.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 320aa MW: 33353 Da PI: 7.4772

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.7G203600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.6e-05	5	26	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+++F ++ L H+r H Sevir.7G203600.1.p 5 TCKLCSRRFASPRALAGHMRAH 26 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.02	4	26	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.66	4	27	IPR007087	Zinc finger, C2H2
Pfam	PF13894	1.8E-4	5	26	No hit	No description
SuperFamily	SSF57667	5.15E-7	5	26	No hit	No description
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.15E-7	173	197	No hit	No description
Pfam	PF13912	1.3E-10	177	202	IPR007087	Zinc finger, C2H2
SMART	SM00355	41	178	198	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	0.77	241	263	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.683	241	263	IPR007087	Zinc finger, C2H2
Pfam	PF13912	5.5E-11	241	263	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	243	263	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MAKNTCKLCS RRFASPRALA GHMRAHSIAA AKSQISSASS ASTSIAAGGG GGVEDDADAK 60 KPSPIQGHAL REKPKRRVRL AESDFSDRES ETTDYYSPDA KRSHDGSGDA EPVSSVSDGD 120 TPVEDVALSL MMLSRDSWPA PPPPSYYSYY RADSDDEGDA RRPAVAAAAA AAQKRTRYEC 180 PACKKVFRSY QALGGHRASN VRGGRGGCCA PPLSNPPPPA HLRPLPECDG GEEDPTKAQP 240 HECPYCFRLF PSGQALGGHK RSHLCSGAAA AAAAAPGADP LSVATKSLGF IDLNLPAPFD 300 DVEHSAVSDP FLSPKPAGS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	78	KPKRRVR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.7G203600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976448.1	0.0	zinc finger protein ZAT1
TrEMBL	K3Y8S3	0.0	K3Y8S3_SETIT; Uncharacterized protein
STRING	Si010615m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3518	33	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	2e-25	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Sevir.7G203600.1.p