PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G202100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SBP
Protein Properties Length: 402aa    MW: 40369 Da    PI: 9.4285
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G202100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.94.5e-41124200177
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                         +CqvegC+++l+ akeyhrrhkvCe+hskap v+v g eqrfCqqCsrfh++sefD++krsCrrrLa+hnerrrk++
  Sevir.7G202100.1.p 124 RCQVEGCHVELAGAKEYHRRHKVCEAHSKAPRVVVLGAEQRFCQQCSRFHAISEFDDAKRSCRRRLAGHNERRRKSN 200
                         6**************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.0E-34118186IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.385122199IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-38123202IPR004333Transcription factor, SBP-box
PfamPF031103.1E-32125198IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEGNGGGGGS GSGSAAPPWD LGVHWAPAAS PYPPQPPFVP RPSGGATSHY HQQELTCLKL  60
GKRPCCWAGA AGGSQVALQG GAGLVHGNGS AAGAGGASGA AAAEGRRKEK QAAAGASGAA  120
AVARCQVEGC HVELAGAKEY HRRHKVCEAH SKAPRVVVLG AEQRFCQQCS RFHAISEFDD  180
AKRSCRRRLA GHNERRRKSN ASEAMARSAA HPHGMAPFGH GFLPPPCGLP ASPAGALSLL  240
SSARGAPWLV PAAPDISARS SAALDELIAE NRAALLAWQF FSSSDRPAPG RHLAPPSSSV  300
GRALTPAEQA AGWHHPHDGA GAGGGGRYYH EAAASSGHTT LDLMQTAAAA TTVASAGAPP  360
FRPVPERAAA ARPPRAKDGD AAGCSSDAWA PAGGGGGARA L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-33115198184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00290DAPTransfer from AT2G33810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G202100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0546541e-127BT054654.2 Zea mays full-length cDNA clone ZM_BFb0036O05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978167.10.0squamosa promoter-binding-like protein 7
SwissprotQ01JD11e-116SPL7_ORYSI; Squamosa promoter-binding-like protein 7
TrEMBLK3Y7S10.0K3Y7S1_SETIT; Uncharacterized protein
STRINGSi010262m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103033439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-35squamosa promoter binding protein-like 3