 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sevir.7G194700.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 261aa MW: 29051.4 Da PI: 5.7465 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.7G194700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.4 | 2.9e-19 | 60 | 113 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ft+eq++ Le++F+ + ++ +e+ eLA++lgL+ rqV +WFqN+Ra+++
Sevir.7G194700.1.p 60 KRRFTEEQIRSLESMFHAhQAKLEPREKVELARELGLQPRQVAIWFQNKRARWR 113
458**************989*********************************9 PP
|
| 2 | HD-ZIP_I/II | 122.2 | 2.5e-39 | 58 | 151 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
e+krr+++eq+++LE++F++++ kLep++KvelareLglqprqva+WFqn+RAR+++kqlE+dy+aL++++dal+++ e L++e+ +L+++
Sevir.7G194700.1.p 58 ERKRRFTEEQIRSLESMFHAHQaKLEPREKVELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRAKFDALHARVEFLKQEKLALTTQ 148
69*******************99******************************************************************99 PP
HD-ZIP_I/II 91 lke 93
l+e
Sevir.7G194700.1.p 149 LHE 151
986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 261 aa
Download sequence Send
to blast |
MDRPDHHQHQ FYMPLPVQQQ QQQLCAPMMD EQASFLAARG GGGRGGSGGT VAGKGKGERK 60
RRFTEEQIRS LESMFHAHQA KLEPREKVEL ARELGLQPRQ VAIWFQNKRA RWRSKQLEHD 120
YAALRAKFDA LHARVEFLKQ EKLALTTQLH ELSERLRERE DRAGSGVAAT ASSSSCNGGG 180
VVGEEAEDDK RNVVLGCVDM EPPESCVLGG ACATPADVSV ESECDDHHHH LDYDDGFPES 240
FCATPELWEP WPLVEWNAVA *
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
| UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ728250 | 0.0 | KJ728250.1 Zea mays clone pUT6527 HB transcription factor (HB66) mRNA, partial cds. |
