PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G191100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | YABBY | ||||||||
Protein Properties | Length: 265aa MW: 28067.2 Da PI: 7.9285 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 192.1 | 2.6e-59 | 25 | 222 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaa.eshldeslkee........................ 70 eq+Cyv+C+ C+tilav vP +slfk+vtvrCGhC++llsvnl+ +aa +++l ++++ Sevir.7G191100.1.p 25 AEQEQLCYVHCKCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPTAAaNNQLPFGGQQQallsptsphglldemmpfqqapsl 115 6789*******************************************99976655055555555555888999999*87777777665543 PP YABBY 71 .lleelkveeenlksnvekeesastsvssekl..................senedeevprvpp.virPPekrqrvPsaynrfikeeiqrik 141 + ++ + st +s ++ + ++ ++p+ +r ekrqrvPsaynrfik+eiqrik Sevir.7G191100.1.p 116 tS-------------AEPASACVSTITSINNScggrnnasamsmappplkPAPQEPQLPKSAAsGNRTAEKRQRVPSAYNRFIKDEIQRIK 193 21.............22222222222222222223333333344677667677777888876658************************** PP YABBY 142 asnPdishreafsaaaknWahfPkihfgl 170 asnPdi+hreafsaaaknWahfP+ihfgl Sevir.7G191100.1.p 194 ASNPDITHREAFSAAAKNWAHFPHIHFGL 222 ***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.4E-67 | 26 | 222 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.67E-7 | 168 | 215 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.0E-4 | 175 | 214 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 8.08E-5 | 176 | 212 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MMSSVPEAAF AMDQHLAPPQ LQTAAEQEQL CYVHCKCCDT ILAVGVPCSS LFKTVTVRCG 60 HCANLLSVNL RGLLLPTAAA NNQLPFGGQQ QALLSPTSPH GLLDEMMPFQ QAPSLTSAEP 120 ASACVSTITS INNSCGGRNN ASAMSMAPPP LKPAPQEPQL PKSAASGNRT AEKRQRVPSA 180 YNRFIKDEIQ RIKASNPDIT HREAFSAAAK NWAHFPHIHF GLMPDQGLKK ASMQNHEGGE 240 CMLFKDGLYA AAAAAASSMG IAPF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G191100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976365.1 | 0.0 | protein YABBY 5 | ||||
Swissprot | Q01JG2 | 1e-117 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 1e-117 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | K3Y9G7 | 0.0 | K3Y9G7_SETIT; Uncharacterized protein | ||||
STRING | Si010859m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 9e-55 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G191100.1.p |
Publications ? help Back to Top | |||
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