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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sevir.7G189500.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
MYB |
| Protein Properties |
Length: 337aa MW: 35787.3 Da PI: 8.7016 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.7G189500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 51.8 | 1.9e-16 | 54 | 101 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+W +eEd+llvd v+ G+g+W+ ++ g++R++k+c++rw +yl
Sevir.7G189500.1.p 54 KGPWAPEEDKLLVDFVQANGPGNWRMLPKLAGLNRCGKSCRLRWTNYL 101
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 53.3 | 6.4e-17 | 107 | 152 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T+eE+ +v++++ G++ W+ Ia+ ++ gRt++++k++w+++l
Sevir.7G189500.1.p 107 RGPFTPEEHNSIVQLHAVVGNK-WSMIAAQLP-GRTDNEIKNYWNTHL 152
89********************.*********.************996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MATAPPPPPL TPRSRRRRCR RHRGRTESDR RRSAAAAAAS MGRTPCCDSK GIKKGPWAPE 60
EDKLLVDFVQ ANGPGNWRML PKLAGLNRCG KSCRLRWTNY LRPDIKRGPF TPEEHNSIVQ 120
LHAVVGNKWS MIAAQLPGRT DNEIKNYWNT HLKKQLRQEA LAGADAAAAQ QLALSAAAAS 180
PCPAARHMAQ WETARLEAEA RLSLLSSSAA TTLTSAAAAA AAAAASSSSS TAAEHAAPDI 240
FLRLWNSEVG ESFRGTAHGP AEAGAPALLP APRGGDDSSA ASTNGTEAAD DYHAFLELAV 300
EEFALLHGRL GGAFSEFTPV DVHVLAEASC LFTPFE*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK108621 | 1e-118 | AK108621.1 Oryza sativa Japonica Group cDNA clone:002-147-D04, full insert sequence. |
