![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.7G170200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
Family |
MYB |
Protein Properties |
Length: 274aa MW: 30119.6 Da PI: 6.6677 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.7G170200.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Svi&pid=Sevir.7G170200.1.p) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 57.8 | 2.5e-18 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT +Ed+llv+ v+q+G g+W+++++ g++R++k+c++rw +yl
Sevir.7G170200.1.p 18 KGPWTSQEDKLLVEHVRQHGEGRWNSVSKVTGLKRSGKSCRLRWVNYL 65
79********************************************97 PP
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2 | Myb_DNA-binding | 54.3 | 3.1e-17 | 71 | 115 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+ T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
Sevir.7G170200.1.p 71 RGKITPQEESIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 115
8999******************.*********.************97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 274 aa
Download sequence Send
to blast |
MEGEPLGWGR QEVDGWRKGP WTSQEDKLLV EHVRQHGEGR WNSVSKVTGL KRSGKSCRLR 60 WVNYLRPDLK RGKITPQEES IIVQLHALWG NRWSTIARSL PGRTDNEIKN YWRTHFKKGK 120 PSKNIERARA RFLKQRQEMQ SQKQQQLLQM GHVVAKDENE DGGARTVTAA DDDDRGSAVI 180 DDACAAPAVA EAAAGGHHHE DLIMHDAMDF MCPMSCALLL HCAVQGGGTG SCCGSTASDE 240 YGSSEEDGAT WGSLWNLDGV VDDAAGGGPC TLW*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK109620 | 1e-125 | AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence. |