PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G141400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 632aa    MW: 66497.4 Da    PI: 7.1469
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G141400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-05353373323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         Cp CgksF++   L  H+++H
  Sevir.7G141400.1.p 353 CPTCGKSFPTYQALGGHMSSH 373
                         *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.79E-87194No hitNo description
PROSITE profilePS501578.6427294IPR007087Zinc finger, C2H2
PfamPF139129.5E-57296IPR007087Zinc finger, C2H2
SMARTSM003550.00447294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SuperFamilySSF576673.79E-8346373No hitNo description
Gene3DG3DSA:3.30.160.607.4E-4348375IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.305351378IPR007087Zinc finger, C2H2
PfamPF139123.9E-11351373IPR007087Zinc finger, C2H2
SMARTSM003550.019351373IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280353373IPR007087Zinc finger, C2H2
PROSITE profilePS501578.704440462IPR007087Zinc finger, C2H2
PfamPF139122.1E-10440463IPR007087Zinc finger, C2H2
SMARTSM003550.095440462IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280442462IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MNSRAYQFQL QAAKAAAEAP PVHAVDDDAL EPPTPKALLL ELDEAQGTAD APPAPCQGNG  60
VAPMGVGNAE PTKCPECPKW FASEKAMFGH LRKHPERGYK GAIRPATASA AAAVAGDKKS  120
KKQEARKDAD VSAMNMTAAA ATAGGKKPWE EAELSTKWPV TAKRGRAPLA PSGERALEAG  180
KQASSCSEDE EAAMILLGLA SSSHSTTSET QQESVQQAVH APDAASGHQM PDVEEPMVVD  240
HVAGNQTPPE AEQIVQPEIV LEVSAESQTP AVKEPTNLEI TTEAVLVVVP ANKSAIAPSP  300
GSSGAGAKKA KKRRAAPDLE QTAASSPAPP EGADGKPAVW RIPSPASDKK HGCPTCGKSF  360
PTYQALGGHM SSHVKGKDAA RHDDLVAAQA MHNILAHRSL SGGGVFITAG GGAGAGWGLD  420
LHVQDVQPPT PAVAQSAAPH VCSECHMTFP TGQALGGHKR KHWFPEKHQA KAAAPAELSA  480
PAPAPAEPAA RDFDLNELPE EGEVTKSVNQ PEGHNLACSY QLSRIYTGTQ VTPNRENNVR  540
EIIPDQTTPW ARLAPARGFP VRGCRDPWHW NGTTPGVGIT SRREARLPTR DDVERAHRAR  600
RTAPPTQVER ERAPAGEGPA VRQRAWRIHH V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G141400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008671251.11e-137uncharacterized protein LOC103648579
TrEMBLK3YD640.0K3YD64_SETIT; Uncharacterized protein
STRINGSi012167m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144001425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.12e-14C2H2 family protein