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Plant Transcription
Factor Database
|
Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sevir.7G133200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
MYB |
| Protein Properties |
Length: 380aa MW: 40244.9 Da PI: 7.0644 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.7G133200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 58 | 2.2e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l+ +++q+G g+W++ +++ g+ R++k+c++rw +yl
Sevir.7G133200.1.p 14 KGPWTPEEDQKLLAYIEQHGHGCWRSLPAKAGLQRCGKSCRLRWTNYL 61
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 52.9 | 8.4e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
Sevir.7G133200.1.p 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112
89********************.*********.************996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 380 aa
Download sequence Send
to blast |
MGRSPCCDKE GLKKGPWTPE EDQKLLAYIE QHGHGCWRSL PAKAGLQRCG KSCRLRWTNY 60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG 120
IDPVTHKPRS DALGAGGAGG AAAGAQHAKA AAHLSHTAQW ESARLEAEAR LAREARLRAL 180
AASASVSAPA PSSAAHGLES PTSTLSFSES AALASVLEAH GAAAAAAAAR AAMQPMQAYE 240
EACKEHEQQQ QQLWGDHVVH AADAAFAGAG FTGLLLEGAL NQLQQDLRPA ARHGAGDDAG 300
LQETEEEKNY WDSILNLVNS SSVSQPTSVA APTPEAYSSS ASLTTSVVVT APEAYSSSTS 360
LTTSIAVPPP EAYSPAPEF*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK360378 | 0.0 | AK360378.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1116O14. |
| GenBank | JF951918 | 0.0 | JF951918.1 Triticum aestivum clone TaMYB16 R2R3-MYB protein mRNA, complete cds. |
