 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sevir.7G118200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
NAC |
| Protein Properties |
Length: 343aa MW: 37269.2 Da PI: 7.0807 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.7G118200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 169.6 | 1e-52 | 10 | 139 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88
+ppGfrFhPtdeel+ +yLkkkv +k++l evi+evd++k+ePw+L++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+
Sevir.7G118200.1.p 10 VPPGFRFHPTDEELLLHYLKKKVGFEKFDL-EVIREVDLNKIEPWELQErcRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGR 99
69****************************.99**************963433332566******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
dk + + + +++g++ktLvfy+grap+g+ktdW+mheyrle
Sevir.7G118200.1.p 100 DKCIRT-SYRKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 139
*****9.8999****************************85 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048829 | Biological Process | root cap development |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MAAFSSSNGV PPGFRFHPTD EELLLHYLKK KVGFEKFDLE VIREVDLNKI EPWELQERCR 60
IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGFWKATGRD KCIRTSYRKI GMRKTLVFYR 120
GRAPHGQKTD WIMHEYRLED ADDAQGGTSE DGWVVCRVFK KKCFFKIGGG EGSTSSQGVD 180
AGGHLAVSPP LGGHHDQARA AALASHYMHP HQYYHHHASS YYSQMQAPAP HAAYSHHVQV 240
QDLLTNHRPA DDAGAGAGYD FSGLPVEHHP GGLDVGSSDG VAADGGQLGE GGDQASGAAA 300
AEQWQAMDGF SNGGSAAVQQ MAGAMSSGAQ RGGEMDLWGY GR*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-55 | 10 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-55 | 10 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-55 | 10 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-55 | 10 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 2e-55 | 10 | 162 | 17 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 2e-55 | 10 | 162 | 17 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU971542 | 0.0 | EU971542.1 Zea mays clone 366845 NAC domain-containing protein 76 mRNA, complete cds. |
