PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G109900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ZF-HD
Protein Properties Length: 300aa    MW: 30774.3 Da    PI: 7.3425
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G109900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer89.53.3e-282269557
         ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                        +YkeC++NhAa++Gg+a+DGCgE+mps     ++++lkCaACgCHR+FHRr  
  Sevir.7G109900.1.p 22 KYKECMRNHAAAMGGQAFDGCGEYMPS-----SPDSLKCAACGCHRSFHRRAA 69
                        8*************************9.....799****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015661.5E-242268IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-192264IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047708.4E-232268IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.1182368IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.86E-19168235IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-30168236IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-27177234IPR006455Homeodomain, ZF-HD class
CDDcd000860.00909178236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MMDQLSLVPY EGAGGGGDGG GKYKECMRNH AAAMGGQAFD GCGEYMPSSP DSLKCAACGC  60
HRSFHRRAAG SSSSCGGGGG AAPFFFRPPV PALPAPPQPH YHHHHQAALQ AFLPSVPAAG  120
VAPHLALPYH AVPNAAAAPW LARSGSETPP RPDDFGVGVA GLGLVGGSGG GSGSFGRKRF  180
RTKFTPEQKE RMREFAEKQG WRIQRNDDGE LERFCDEIGV KRQVLKVWMH NHKNQLASTS  240
PTSAVGMNPA AAGIGINPTA AGIGTGAGVA GDGDGDDDDT DDSPPRAAVS SPSPSPISV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-251782391879ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G109900.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270250.0KJ727025.1 Zea mays clone pUT4006 ZF-HD transcription factor (ZHD15) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975654.10.0zinc-finger homeodomain protein 8-like
SwissprotQ7X7N37e-80ZHD8_ORYSJ; Zinc-finger homeodomain protein 8
TrEMBLA0A368RTW70.0A0A368RTW7_SETIT; Uncharacterized protein
STRINGOMERI04G10740.14e-81(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136492225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-24homeobox protein 31