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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G086900.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Trihelix | ||||||||
Protein Properties | Length: 253aa MW: 26932.3 Da PI: 8.3169 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 82.2 | 6.8e-26 | 20 | 114 | 1 | 83 |
trihelix 1 rWtkqevlaLiearremeerlr.rgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 rWt+qe+l+Lie++r +e++ r rg+ ++ ++W++v++++r++g+ r+p+qC+++w+nl+++ykki+e+e+++ + + Sevir.7G086900.7.p 20 RWTRQEILVLIEGKRVVERSGRgRGRgrarggggaggegAEPTKWAAVAEYCRRHGVDRGPVQCRKRWSNLAGDYKKIREWERGGFAAR-- 108 8****************9999853335577888888888********************************************983322.. PP trihelix 78 tcpyfd 83 + + f Sevir.7G086900.7.p 109 KEASFW 114 234444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.3E-11 | 20 | 104 | No hit | No description |
PROSITE profile | PS50090 | 6.353 | 20 | 91 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-6 | 20 | 90 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MSSAGEARGV GTGRGSRLPR WTRQEILVLI EGKRVVERSG RGRGRGRARG GGGAGGEGAE 60 PTKWAAVAEY CRRHGVDRGP VQCRKRWSNL AGDYKKIREW ERGGFAARKE ASFWAMRNDA 120 RRERRLPGFF DREVYDILEG RAPGNAAAAA VARPVAMDVE SKEEVAAALD GGARGAEGAG 180 LFSSSEDEDD QEDDAATPSP TPMATPALAP APVALPISES ELSEIGLPAI SFALLCCLVN 240 PLLLLLRSYS NV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 49 | RGRGRGRARG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G086900.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU949356 | 1e-155 | EU949356.1 Zea mays clone 402974 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826048.1 | 1e-112 | trihelix transcription factor ASR3-like isoform X1 | ||||
Swissprot | Q8VZ20 | 8e-51 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | A0A2T8IC05 | 1e-110 | A0A2T8IC05_9POAL; Uncharacterized protein | ||||
STRING | Si010590m | 1e-100 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 5e-45 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G086900.7.p |
Publications ? help Back to Top | |||
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