PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G086900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 331aa    MW: 35716.6 Da    PI: 8.8381
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G086900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.51.2e-2520114183
            trihelix   1 rWtkqevlaLiearremeerlr.rgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 
                         rWt+qe+l+Lie++r +e++ r rg+             ++ ++W++v++++r++g+ r+p+qC+++w+nl+++ykki+e+e+++ + +  
  Sevir.7G086900.1.p  20 RWTRQEILVLIEGKRVVERSGRgRGRgrarggggaggegAEPTKWAAVAEYCRRHGVDRGPVQCRKRWSNLAGDYKKIREWERGGFAAR-- 108
                         8****************9999853335577888888888********************************************983322.. PP

            trihelix  78 tcpyfd 83 
                         + + f 
  Sevir.7G086900.1.p 109 KEASFW 114
                         234444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-52090IPR009057Homeodomain-like
PROSITE profilePS500906.3532091IPR017877Myb-like domain
PfamPF138374.0E-1120104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSSAGEARGV GTGRGSRLPR WTRQEILVLI EGKRVVERSG RGRGRGRARG GGGAGGEGAE  60
PTKWAAVAEY CRRHGVDRGP VQCRKRWSNL AGDYKKIREW ERGGFAARKE ASFWAMRNDA  120
RRERRLPGFF DREVYDILEG RAPGNAAAAA VARPVAMDVE SKEEVAAALD GGARGAEGAG  180
LFSSSEDEDD QEDDAATPSP TPMATPALAP APVALPISEK TTDASRQESS EQAGTSKRKQ  240
LEQITEDSPA QCGQKRQRSD DNASGRATTT DLQERLVEIL DRSSQMVAAQ LEAQNINSRL  300
DREQRKDQVS SLLSVLGKVA DALFRIADKL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14049RGRGRGRARG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G086900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9493561e-155EU949356.1 Zea mays clone 402974 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826048.10.0trihelix transcription factor ASR3-like isoform X1
TrEMBLA0A2T8IC050.0A0A2T8IC05_9POAL; Uncharacterized protein
STRINGSi010590m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.13e-45Trihelix family protein