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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G079600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 180aa MW: 19125.9 Da PI: 8.2156 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.2 | 2.5e-12 | 67 | 147 | 5 | 90 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsef 90 + +s+v+ ++v+p++ a + + t+t +grsWe+++ +++++ l++GW++F+ +ngL+ gD +v++l+ g+ e+ Sevir.7G079600.1.p 67 MCKSHVHPPFQVVVPRSLAPFLPDA-TVPATVT---WRGRSWEMRF--TGGRQIQRLEAGWRGFALDNGLRLGDGCVLELVdGNPEG 147 5667777777777777777444322.2333344...689*******..9999999************************98344333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.02E-15 | 60 | 146 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.7E-14 | 60 | 156 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.42E-13 | 61 | 149 | No hit | No description |
PROSITE profile | PS50863 | 10.997 | 63 | 158 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.6E-10 | 65 | 146 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MASNSSTPTP CSQGPRGIAV ADKNAESDAG TPKRADPQSA SEMACVDGAI QPRIVPLLGK 60 PYFTCIMCKS HVHPPFQVVV PRSLAPFLPD ATVPATVTWR GRSWEMRFTG GRQIQRLEAG 120 WRGFALDNGL RLGDGCVLEL VDGNPEGVVF RAQVLRADIP AAIRERAGGY TSSAPILID* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G079600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU954164 | 1e-119 | EU954164.1 Zea mays clone 1457632 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975400.1 | 1e-128 | B3 domain-containing protein Os04g0386900 | ||||
Swissprot | Q7XLP4 | 3e-66 | Y4869_ORYSJ; B3 domain-containing protein Os04g0386900 | ||||
TrEMBL | A0A368RT90 | 1e-127 | A0A368RT90_SETIT; Uncharacterized protein | ||||
STRING | Si012575m | 5e-88 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8954 | 35 | 45 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G079600.1.p |
Publications ? help Back to Top | |||
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