PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G076300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 341aa MW: 36469.6 Da PI: 5.6381 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.9 | 1.1e-10 | 138 | 182 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR r+++++ eLr+l+P+ +K++Ka+i Av Y+k+Lq Sevir.7G076300.1.p 138 IVSERKRRVRMKEKLYELRSLVPNI-----TKMDKASIIADAVVYVKNLQ 182 568*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.07E-15 | 125 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.16E-13 | 129 | 183 | No hit | No description |
PROSITE profile | PS50888 | 15.383 | 132 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-16 | 134 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-11 | 138 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-7 | 138 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MEHELLQMLH LPPHELGQDH LTVSAAFFDV HGDAHFPGSG GGFAGAVADD DCSWVEDLMQ 60 LGDELFGGAG AGCDDNNAAG MDEGNRHPWQ WNGGDGSPPS VEQGAGELAS EPHRDDDGGD 120 GDGASPVTRK RRDRSKTIVS ERKRRVRMKE KLYELRSLVP NITKMDKASI IADAVVYVKN 180 LQAHARKLKE EVSALEAQPR SPRQGQQQQR NRRAAAAAAA AGRRRQERDE DNGTAASGAR 240 VTHLGAAQVG EGRFFVTVEC ERRDGVAAPL CAAVESLACF RVETSSLVRS GTDRVVSTLT 300 LKVNEQVGDA SVCEGSVVKL LVMAALLKEG FRPEAAVEIS * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 144 | KRRDRSKTIVSERKRR |
2 | 202 | 212 | RQGQQQQRNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G076300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT835040 | 1e-85 | CT835040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119K17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977937.3 | 0.0 | transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR | ||||
TrEMBL | K3Y8J1 | 0.0 | K3Y8J1_SETIT; Uncharacterized protein | ||||
STRING | Si010533m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5546 | 30 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28160.1 | 9e-33 | FER-like regulator of iron uptake |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G076300.1.p |