PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G070000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 700aa    MW: 77076.8 Da    PI: 6.7799
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G070000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-1852106357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         +R +ft+eq++eLe  F+++  p+ e+ ++LA+k+gL+ r Vk WFqNrR ++kk
  Sevir.7G070000.1.p  52 HRKCFTAEQIQELEFWFQECALPDDEMNQDLATKVGLEARHVKAWFQNRRSQMKK 106
                         79***************************************************97 PP
2START384e-13318412111205
                         EEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE.-EESSE.EEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH.HHHHHHHHHHHHH CS
               START 111 fvRyirqlgagdwvivdvSvdseqkppesssvvR.aellpS.giliepksnghskvtwvehvdlkgrlphwllrslv.ksglaegaktwva 198
                         ++R++rq  +  w++vd S+d  +     +++ R + + +S ++l++++sng +kv w+ h+++++  ++ l+r+l+ +sg+a ga +w+ 
  Sevir.7G070000.1.p 318 SLRITRQ-IKNMWAVVDLSIDGMRGIL--PGGKRiGYTSCSaCCLLQDMSNGLCKVLWIVHAEYDDTAVPPLFRQLLfQSGQALGAIRWLT 405
                         5788888.8889999999999998864..455552445565267789****************************86499*********** PP

                         HTXXXXX CS
               START 199 tlqrqce 205
                          lqrqce
  Sevir.7G070000.1.p 406 SLQRQCE 412
                         ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-1844109IPR009057Homeodomain-like
PROSITE profilePS5007116.5247107IPR001356Homeobox domain
SuperFamilySSF466895.99E-1648107IPR009057Homeodomain-like
SMARTSM003896.0E-1349111IPR001356Homeobox domain
PfamPF000463.3E-1652106IPR001356Homeobox domain
CDDcd000863.69E-1452107No hitNo description
PROSITE profilePS5084818.772202416IPR002913START domain
SuperFamilySSF559612.06E-6278412No hitNo description
PfamPF018522.9E-8319412IPR002913START domain
SuperFamilySSF559612.75E-5503631No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MENEGQMNNN GNETAPLHRI NQHEYDINAP KGAEDHLNTE RDEDDEEQSS EHRKCFTAEQ  60
IQELEFWFQE CALPDDEMNQ DLATKVGLEA RHVKAWFQNR RSQMKKKAVG GENKYIQQQN  120
DKLLAENKKL RQQLQPQSCG RCGDPTNEKW RLLIENARLN HTYLCAQENL IKLIHNANLS  180
PSETMEHLAS ASLNLVPFTY NGRTDQAVLL SYSQRAMKEF LMLAVKGEPM WLPTMNGEIL  240
NEQEYKRHMF PGLLGPCPQG FVMEATKEAN IVRASASGIS HWTLMFPGII EGVRASKVLS  300
SGTSTSRDGL IQEVRVKSLR ITRQIKNMWA VVDLSIDGMR GILPGGKRIG YTSCSACCLL  360
QDMSNGLCKV LWIVHAEYDD TAVPPLFRQL LFQSGQALGA IRWLTSLQRQ CEYMAIILRS  420
SQVPSSVVSG VAMSMLGRRS ILALAQRMMA SFYTAVSEPI TLKPGNIVKE WRGSCGTATE  480
LSEATVRMII SKCATMGGSP ALVLSVTMTV WLPGMPPQRV HEYLCNEQRR GEWDTFANTG  540
AVQELTSVIT HPYLRGNNVV SVLEARDVPD QTNSNMLIMQ EATSDVSCSL LVYSSIERNL  600
IHAVMNGGDN TSIYLLPSGF AILPDGHGKT HRAAAASSSS APTGHNGTAG SLLTAAYQAL  660
LPNNPSNHEA GTFNNAGNRV CNAINQILAA IGADIAVPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G070000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684238.10.0homeobox-leucine zipper protein ROC6-like
TrEMBLA0A368RST40.0A0A368RST4_SETIT; Uncharacterized protein
STRINGPavir.Ga02365.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83241742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-96protodermal factor 2