PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G069000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 732aa    MW: 80649.1 Da    PI: 6.2063
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G069000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox672.5e-2167122156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +r + +ft++q+e+Le+lF+ + +p+  +r+eLA+k+gL+ rqVk+WFqNrR+k k
  Sevir.7G069000.1.p  67 KRGKNRFTAKQIEQLESLFQVSAHPDDPTRQELADKIGLEARQVKFWFQNRRTKTK 122
                         678899************************************************98 PP
2START119.64.3e-382264502205
                         HHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
               START   2 laeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                         +ae+a++e++ +a  +ep+W      +++ ++e+  +  ++        + +ea + ++ v +++ +lv+ l d++ +W+++++    ++ 
  Sevir.7G069000.1.p 226 YAERALNEFMMLAVKDEPMWLPTIngKMLHNQEYNCRTYPGLLgpcpqgFVMEATKQTTTVRGTASDLVAMLTDVS-CWSKMFPgiieSVR 315
                         6899*****************99988666666665555554447888888**************************.***********999 PP

                         EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCE CS
               START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksngh 161
                           +v+ssg      g +q m+ +l + sp +p R + f+Ry+++ +  +w++vdvS+d  +  +    + +++ ++llpSg+l++++sng 
  Sevir.7G069000.1.p 316 ASKVVSSGistsrdGLIQEMNVDLWVQSPRAPnRSVKFLRYSKETENNQWAVVDVSIDGIRGIEPngsQIGYMSCRLLPSGCLLQDMSNGL 406
                         9999******************************************************987655556899********************* PP

                         EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                         +kvtw+ h+++++ +++ l+r l +sg+a ga++w+a lqrqce
  Sevir.7G069000.1.p 407 CKVTWIVHAEYDETTVSPLFRGLFQSGQALGASRWLASLQRQCE 450
                         *******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-2244124IPR009057Homeodomain-like
SuperFamilySSF466897.52E-1955123IPR009057Homeodomain-like
PROSITE profilePS5007118.80364124IPR001356Homeobox domain
SMARTSM003894.2E-1966128IPR001356Homeobox domain
PfamPF000468.9E-1967122IPR001356Homeobox domain
CDDcd000862.96E-1767122No hitNo description
PRINTSPR000316.9E-595104IPR000047Helix-turn-helix motif
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PRINTSPR000316.9E-5104120IPR000047Helix-turn-helix motif
PROSITE profilePS5084833.204216454IPR002913START domain
CDDcd088751.30E-79220450No hitNo description
SuperFamilySSF559613.89E-20223450No hitNo description
SMARTSM002341.8E-20225451IPR002913START domain
PfamPF018521.7E-31226450IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MDNEWQLNSN NGQGMGLDPG NETAYPNWIN HMEEYDIDAL LGAEDHVNTD QDEDDEEHHH  60
DGSKSSKRGK NRFTAKQIEQ LESLFQVSAH PDDPTRQELA DKIGLEARQV KFWFQNRRTK  120
TKAKAVGDQN KDIKQENAQL HAENMKLQQT LACGRCRDPT EHKWHLLNEN ARLKDTKRRA  180
QEYLIKLIHD SNLPHSETLE HLESASLNLV PFDDNGSNYQ ATLLSYAERA LNEFMMLAVK  240
DEPMWLPTIN GKMLHNQEYN CRTYPGLLGP CPQGFVMEAT KQTTTVRGTA SDLVAMLTDV  300
SCWSKMFPGI IESVRASKVV SSGISTSRDG LIQEMNVDLW VQSPRAPNRS VKFLRYSKET  360
ENNQWAVVDV SIDGIRGIEP NGSQIGYMSC RLLPSGCLLQ DMSNGLCKVT WIVHAEYDET  420
TVSPLFRGLF QSGQALGASR WLASLQRQCE YMATLHCTHS SGPAMSALGR RGVLDLAQRM  480
MVSFYTAVSK PVTPGPSNIV NEWHGSCDIG AKTFLATVRM VIWNISTMGQ PPALVLCATT  540
TVWLPGVPPH RVHEYLCNGQ RRGEWDKFGY GGAVQELSSI VTCRQLRGNV VSVLQPSDVT  600
VRANSNMLIL QEATSDLSCS LVVYSFVEKN MMCAVMDGAD NSSVFLLPSG FAILPDGHAK  660
AHRAAAASSS YSTPTGQNST AGSLLTAAYQ QILPSSISTH ALETLDDAGS RVCQAINQIL  720
AAVGADIAIP A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172178LKDTKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G069000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684239.10.0homeobox-leucine zipper protein ROC6-like
TrEMBLA0A368RUC50.0A0A368RUC5_SETIT; Uncharacterized protein
STRINGSi012707m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83241742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-120protodermal factor 2