PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G062300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 441aa    MW: 47324.7 Da    PI: 6.9472
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G062300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-05124145223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +Cp Cgk F++  ++  H+r+H
  Sevir.7G062300.1.p 124 ECPECGKFFKNDKSMFGHLRSH 145
                         6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.014123145IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.263123150IPR007087Zinc finger, C2H2
PfamPF139120.0041124145IPR007087Zinc finger, C2H2
SuperFamilySSF576676.23E-7124145No hitNo description
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
SuperFamilySSF576676.23E-7300327No hitNo description
SMARTSM003550.52305328IPR015880Zinc finger, C2H2-like
PfamPF139127.0E-7305329IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494305332IPR007087Zinc finger, C2H2
PROSITE patternPS000280307328IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MSKGGLLCWL LVLEVCIAQQ SLISISQLTA GGQIGDDDLL FQDPIRLMSI HGRDELGGHS  60
SDSIFDDWVD TGDEYASINR GVPVAGGRVG DEEEEGLRPP YGDDDGGDSG GTKGSSGSGG  120
VDVECPECGK FFKNDKSMFG HLRSHPNRGY KGAIPPVKKL KQSPGTTAAA SASSSSQGTD  180
RTPAQRSSRD PQLTPLEILC AYVLLTLKYR GHTTQQVPQP PSSSFGKLDA IGQAEGGTEG  240
SVSRNAAAEL KCNAGAEARK LENCDEHGYS ILKISKKRRN MPKDVREAHR KKARLVPTLK  300
EKHPYACKHC KAEFPTNQAL GGHVAGHHRE KKVPSRLNDP SAVTAVSQNG KHQVKDGNDD  360
DDDKNLSLRR GLLSEQFSMA LDVPWQSGHQ ASGGKMRHHY ERRNGDLSMA VAAPTPTPID  420
DGGAGRPWNI DLNVEAPEQE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154161PPVKKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G062300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813526.11e-154uncharacterized protein LOC112890871
TrEMBLK3YE910.0K3YE91_SETIT; Uncharacterized protein
STRINGSi012553m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139162028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.12e-06C2H2 family protein