PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G061300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 285aa    MW: 31331.1 Da    PI: 9.838
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G061300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.97.5e-13511123399
                         -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         + t  + ++ g++W+v++   + +++ +l++GW +F  a+g+ +g fvv++++g  ++ l++k+f++
  Sevir.7G061300.1.p  51 G-TALVVSPFGKVWRVEV--GRDGDGAFLGRGWAGFLAAHGVGVGWFVVLRHEG--GGALTFKAFDT 112
                         3.788899**********..999999*************************765..77789999987 PP
2B342.89.4e-141502291496
                         T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                  B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                           +++p +f++++  ++  +s+t ++ ++ g+ W+++l  ++ ++++++++GW++F + +g+  gD+++++++g++ f  ++k+
  Sevir.7G061300.1.p 150 EKMIIPARFVKRYvTEEYLNSRTAVIFSPLGKFWQIEL--ENDQSGMFFAGGWSQFLEFHGISKGDVLLLRYEGNMVF--KFKA 229
                         459**********8444458899***************..999999****************************9999..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.2E-416113IPR003340B3 DNA binding domain
SuperFamilySSF1019369.42E-1323115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-1150114IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-1051112IPR003340B3 DNA binding domain
CDDcd100172.84E-755111No hitNo description
PROSITE profilePS508639.26360113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-18136235IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.534137233IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-19137239IPR015300DNA-binding pseudobarrel domain
CDDcd100176.98E-13138230No hitNo description
SMARTSM010192.7E-11140233IPR003340B3 DNA binding domain
PfamPF023622.7E-11149228IPR003340B3 DNA binding domain
SuperFamilySSF1019361.33E-8247283IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.6E-9249283IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.91251284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MPSSRSNAGA RAVAKQLKVL VPPSFHKMRI SDELAGCFDA GGGVGEGAPG GTALVVSPFG  60
KVWRVEVGRD GDGAFLGRGW AGFLAAHGVG VGWFVVLRHE GGGALTFKAF DTSFCIKEFA  120
APAAVMASRS RKGVSCKPQF IRIIYPNFTE KMIIPARFVK RYVTEEYLNS RTAVIFSPLG  180
KFWQIELEND QSGMFFAGGW SQFLEFHGIS KGDVLLLRYE GNMVFKFKAF GLSGCQKDFK  240
NKDAGINQRD GWKSFCHENR LKTGDLCTFN IIETTLWHVE IIRH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G061300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684470.11e-179putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS747e-89Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400
TrEMBLA0A368RU491e-178A0A368RU49_SETIT; Uncharacterized protein
TrEMBLK3Y7G41e-178K3Y7G4_SETIT; Uncharacterized protein
STRINGSi010155m1e-178(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G32460.12e-11B3 family protein