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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G061000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 117aa MW: 12945.2 Da PI: 8.614 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52 | 1.3e-16 | 22 | 105 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ++k++++ + k + +++p f++++g+ +++++tl+ +s sW+v++ k+ ++ ++GWk+F+++n +kegD ++F +++ Sevir.7G061000.1.p 22 WLKKEISTRMIKIC-ISFPAAFCNAIGLREACTVTLKTSLSSTSSWQVRV-LPYKDTSHQVGSGWKSFCEENLIKEGDLCTFNVIE 105 67888888888888.9*************99987777777889*******.3444445999*********************9664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-15 | 23 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.0E-14 | 23 | 105 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0088 | 23 | 116 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.518 | 36 | 116 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-16 | 36 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.45E-8 | 66 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MASLKNASSR AQGVYVIGPP AWLKKEISTR MIKICISFPA AFCNAIGLRE ACTVTLKTSL 60 SSTSSWQVRV LPYKDTSHQV GSGWKSFCEE NLIKEGDLCT FNVIEMMLWH VIIDRC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G061000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022684232.1 | 3e-65 | putative B3 domain-containing protein Os04g0347400 | ||||
TrEMBL | A0A368RSH3 | 6e-81 | A0A368RSH3_SETIT; Uncharacterized protein | ||||
TrEMBL | K3YDR8 | 6e-78 | K3YDR8_SETIT; Uncharacterized protein | ||||
STRING | Si012375m | 1e-78 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31650.1 | 3e-06 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G061000.1.p |