PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G060500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 373aa    MW: 41571.9 Da    PI: 10.1123
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G060500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.81.3e-101741698
                        EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                        +++p + a+e+  +     +  +  +++++W+v + +   +++ +l++GW+ F+ a g+++g f+v+++  rs++ l++k+f+
  Sevir.7G060500.1.p  1 MRIPDELAAEIAAE-----EALVVGSHSKVWRVGIGW--DGDGALLGRGWRAFAAACGVESGWFLVLRH--RSRGLLTLKAFD 74
                        57999999999755.....578899**********54..444589***********************4..567767887776 PP
2B3361.2e-111141971298
                         HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         + g + +p +fa+++  +++ +++++++  + g+   ++l  + +++++++++GW++F   +g+ e D ++++++g++ f  +vkvf 
  Sevir.7G060500.1.p 114 SMGKMLIPARFAQHYiPKDHLNNRMVIISGPLGKACPIEL--EMNQSSMFFAGGWSQFMAFHGITEADALLLRYEGNMAF--TVKVFG 197
                         55779*******888966667788999999**********..88888899******************************..888875 PP
3B349.76.8e-16278361286
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                         +++ +++++++++ l+lp++f +++g  k++  ++tl+d+ g   sW+v+     ++++ + l++GWk+ +++ gLk gD++++k+++
  Sevir.7G060500.1.p 278 LTKKMNASMMSKHHLSLPRPFYNAIGFRKRC--MITLQDSMGstSSWQVRG--LPYKNGgCQLGSGWKKVCQDTGLKYGDVITLKVIK 361
                         56777888899999***********999888..7*****999889*****9..333333377**********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.785176IPR003340B3 DNA binding domain
PfamPF023621.8E-7174IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-81376IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-91478IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-15101200IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.207103199IPR003340B3 DNA binding domain
SuperFamilySSF1019361.67E-16104201IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-4106199IPR003340B3 DNA binding domain
PfamPF023621.3E-9113196IPR003340B3 DNA binding domain
CDDcd100173.51E-11114196No hitNo description
PROSITE profilePS5086311.462277372IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-16277371IPR015300DNA-binding pseudobarrel domain
CDDcd100178.19E-10278358No hitNo description
Gene3DG3DSA:2.40.330.101.2E-15278371IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-13278361IPR003340B3 DNA binding domain
SMARTSM010190.0029278372IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MRIPDELAAE IAAEEALVVG SHSKVWRVGI GWDGDGALLG RGWRAFAAAC GVESGWFLVL  60
RHRSRGLLTL KAFDDDRCLT ELGAQTTAPA VEATTNYKGA SRKPQFINVF PTKSMGKMLI  120
PARFAQHYIP KDHLNNRMVI ISGPLGKACP IELEMNQSSM FFAGGWSQFM AFHGITEADA  180
LLLRYEGNMA FTVKVFGPDR CQRESMHKDG RMQQNELEIS SWQQEISSAS SRKCQSMNNW  240
PDTDGQRRPK GFVTSSKKKK NKSSETNCAY DLGPPAWLTK KMNASMMSKH HLSLPRPFYN  300
AIGFRKRCMI TLQDSMGSTS SWQVRGLPYK NGGCQLGSGW KKVCQDTGLK YGDVITLKVI  360
KTRLWDVIIM RS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G060500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683932.11e-142putative B3 domain-containing protein Os04g0347400 isoform X1
TrEMBLK3Y8370.0K3Y837_SETIT; Uncharacterized protein
STRINGSi010378m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.18e-12B3 family protein