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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G060200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 124aa MW: 12730.5 Da PI: 8.7752 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.3 | 4.3e-11 | 23 | 103 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + + l++p + a e+g + +++ +g++ +v++ + +g+ +l++GW eF+ a g+ +g +vv++++g ++ l+vk+f++ Sevir.7G060200.1.p 23 SDDSLRIPDELAGEIGAGE---AHVVVPFGQGKVRRVEV--GRDGGGAFLGRGWPEFATACGVGAGWIVVLRHHG--GGVLTVKAFDA 103 567899******9997554...4599999**********..99*99**************************755..77789*99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0057 | 15 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-9 | 23 | 103 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-11 | 25 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-11 | 25 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MASSGSHAAA AARKHLRVLL PFSDDSLRIP DELAGEIGAG EAHVVVPFGQ GKVRRVEVGR 60 DGGGAFLGRG WPEFATACGV GAGWIVVLRH HGGGVLTVKA FDASCYLREL GTPPAVPYRG 120 TAN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G060200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022684232.1 | 8e-46 | putative B3 domain-containing protein Os04g0347400 | ||||
Swissprot | Q7XS74 | 2e-22 | Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400 | ||||
TrEMBL | A0A3L6PYC6 | 6e-53 | A0A3L6PYC6_PANMI; 40S ribosomal protein S27 | ||||
TrEMBL | K3YD39 | 4e-57 | K3YD39_SETIT; Uncharacterized protein | ||||
STRING | Si012142m | 6e-58 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G060200.1.p |