PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G059800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 377aa MW: 41828.3 Da PI: 8.166 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 30.5 | 6.4e-10 | 1 | 78 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++p + ae +g + ++ +sg ++W+v++ + +++ +l++GW e + a g+++g f+v++++g ++ l++k+f++ Sevir.7G059800.1.p 1 MRIPDELAEGIGAG-----EARVVGPSGgkvKVWRVEV--GRDGDGAFLGRGWPEIAAAFGVRDGWFLVLRHHG--GGVLTLKAFDA 78 56888888877644.....588999999999*******..999999*************************765..67678888876 PP | |||||||
2 | B3 | 31.5 | 3.2e-10 | 88 | 175 | 8 | 98 |
-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + ++k+g +p kf+e++ +++++s++ ++ + g+ +v+l + + + +l++GW++ ++++ + +++k++g++ f +vkvf Sevir.7G059800.1.p 88 PPTGKKGFRLIPAKFVEHYiPEEHKNSRMAMVIGSLGKICRVEL--EMNESNLFLRGGWSQVLVSHDVTQANALLLKYEGNMVF--TVKVF 174 6678888899******999*555568889***************..999999******************************99..88887 PP - CS B3 98 r 98 Sevir.7G059800.1.p 175 G 175 5 PP | |||||||
3 | B3 | 47 | 4.7e-15 | 214 | 283 | 16 | 86 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 +l+k+f++++g+ +++++tl+ s +sW+v + + +v+ +GW F+++n LkegD+++F ++ Sevir.7G059800.1.p 214 ESLSKSFCDAIGLLEPCTITLKTSMNSTESWKVGG--LPCMNNsFVIVRGWMMFCQENSLKEGDICTFNIVE 283 5899**********99988888888999*******..44444449***********************9654 PP | |||||||
4 | B3 | 48.8 | 1.2e-15 | 292 | 365 | 13 | 86 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +++ +lp f++++g+ +++++tl+ +s rsW+v + +k+s++yv + Wk+F+++n++k+gD+++++ ++ Sevir.7G059800.1.p 292 THNKYLPYAFCDAIGLREPRTITLKTSMSSTRSWQVLVVPNKNSSHYVRGLDWKRFCEENEIKVGDVCTISIVE 365 45689************88877777777888*******99*****************************99654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.06 | 1 | 79 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.62E-6 | 1 | 77 | No hit | No description |
PROSITE profile | PS50863 | 9.686 | 1 | 79 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.6E-9 | 1 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.9E-9 | 15 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.713 | 81 | 177 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.8E-6 | 82 | 177 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.17E-7 | 87 | 174 | No hit | No description |
SuperFamily | SSF101936 | 9.42E-12 | 94 | 178 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.3E-11 | 97 | 177 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.743 | 199 | 295 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.12 | 204 | 285 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-14 | 207 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.69E-14 | 212 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.82E-9 | 215 | 279 | No hit | No description |
SMART | SM01019 | 0.0035 | 286 | 376 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.13E-10 | 288 | 361 | No hit | No description |
Pfam | PF02362 | 1.1E-13 | 289 | 365 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.1E-14 | 293 | 375 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-13 | 296 | 375 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.11 | 297 | 376 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MRIPDELAEG IGAGEARVVG PSGGKVKVWR VEVGRDGDGA FLGRGWPEIA AAFGVRDGWF 60 LVLRHHGGGV LTLKAFDASG CIRGLGTPPT GKKGFRLIPA KFVEHYIPEE HKNSRMAMVI 120 GSLGKICRVE LEMNESNLFL RGGWSQVLVS HDVTQANALL LKYEGNMVFT VKVFGPDGFQ 180 RESKDKDIRI QQREQKINPS MVVFESVSSG YKCESLSKSF CDAIGLLEPC TITLKTSMNS 240 TESWKVGGLP CMNNSFVIVR GWMMFCQENS LKEGDICTFN IVETTLWHVV ITHNKYLPYA 300 FCDAIGLREP RTITLKTSMS STRSWQVLVV PNKNSSHYVR GLDWKRFCEE NEIKVGDVCT 360 ISIVETTLWH VVVACQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G059800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977884.1 | 1e-135 | putative B3 domain-containing protein Os04g0347400 | ||||
TrEMBL | A0A368RS54 | 0.0 | A0A368RS54_SETIT; Uncharacterized protein (Fragment) | ||||
STRING | Pavir.Gb02309.1.p | 1e-145 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 1e-17 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G059800.1.p |