PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G050300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 275aa    MW: 30054.1 Da    PI: 4.7536
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G050300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.5e-1374117755
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI++Lq
  Sevir.7G050300.1.p  74 IVERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIQQLQ 117
                         79*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.02567116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.85E-1371121No hitNo description
SuperFamilySSF474591.06E-1672130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-1673122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-1673130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-1174117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDAEMGDSYW EETQRYLEYE ELSIYLEAQE DAMSCYDSSS PDGSNNSHSS SAPAGDKGAS  60
GGGRAAAGGN KSIIVERDRR RKLNEKLYAL RSVVPNITKM DKASIIKDAI EYIQQLQAEE  120
RQVLQEVRAF ESAGGGAPPP EEGFEHDEGL LLLQAERTKK MKRARSVPSI VAAAPPPPPP  180
VEVQELRVSE VGERLLVVSV TCAKRRDAMA QVCRAIEELR LRVITASITA VAGCLMHTVF  240
VEVDQIDQVR MKEMIEVALT QLDATRSPPS SMSC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G050300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422101e-69AK242210.1 Oryza sativa Japonica Group cDNA, clone: J075170K16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975234.10.0transcription factor bHLH35
TrEMBLK3Y9C00.0K3Y9C0_SETIT; Uncharacterized protein
STRINGSi010812m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.16e-50bHLH family protein