PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Sevir.7G050200.4.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 212aa MW: 23281.6 Da PI: 8.2321

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.7G050200.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.9	9e-14	3	45	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er RR+r+N+++ Lr+++P+ +K++Ka+i++ A+ YI++Lq Sevir.7G050200.4.p 3 MERHRRRRLNEKLYALRSVVPNI-----TKMDKASIVRDAIAYIQQLQ 45 8*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00353	2.8E-16	1	50	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.164	1	44	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-16	2	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-16	2	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.16E-14	2	49	No hit	No description
Pfam	PF00010	1.9E-11	3	45	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MVMERHRRRR LNEKLYALRS VVPNITKMDK ASIVRDAIAY IQQLQEEERR VLAEVSALES 60 SSDTAATVKT EDHAAAGDAD SYPRRTKRTR TAAADGGSVT LSVDDASPPV QILEVVVSEA 120 GEKMAVVSVR CSRGRDAVAK VCRALEPLRL RVVTASIAAA GDAFVHTMFV EFGLWTNITT 180 EAWEERRVVF HELYGGLIDR TGSLLAGWRL V*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.7G050200.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU961023	8e-49	EU961023.1 Zea mays clone 230521 DNA binding like mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975233.1	1e-116	transcription factor bHLH35
TrEMBL	A0A368RSA2	1e-116	A0A368RSA2_SETIT; Uncharacterized protein
STRING	Si010736m	1e-116	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.4	2e-38	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sevir.7G050200.4.p