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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G050200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 207aa MW: 22688.8 Da PI: 7.6285 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.9 | 8.6e-14 | 3 | 45 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er RR+r+N+++ Lr+++P+ +K++Ka+i++ A+ YI++Lq Sevir.7G050200.2.p 3 MERHRRRRLNEKLYALRSVVPNI-----TKMDKASIVRDAIAYIQQLQ 45 8*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00353 | 2.8E-16 | 1 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.164 | 1 | 44 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-16 | 2 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.85E-13 | 2 | 49 | No hit | No description |
SuperFamily | SSF47459 | 1.7E-16 | 2 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-11 | 3 | 45 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 8.24E-5 | 123 | 195 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 3.9E-5 | 136 | 194 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MVMERHRRRR LNEKLYALRS VVPNITKMDK ASIVRDAIAY IQQLQEEERR VLAEVSALES 60 SSDTAATVKT EDHAAAGDAD SYPRRTKRTR TAAADGGSVT LSVDDASPPV QILEVVVSEA 120 GEKMAVVSVR CSRGRDAVAK VCRALEPLRL RVVTASIAAA GDAFVHTMFV EIEEMSGAQL 180 KETIEAALAH LDVTRHSLKT KRYWED* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G050200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU961023 | 8e-49 | EU961023.1 Zea mays clone 230521 DNA binding like mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975233.1 | 1e-146 | transcription factor bHLH35 | ||||
TrEMBL | A0A368RSA2 | 1e-145 | A0A368RSA2_SETIT; Uncharacterized protein | ||||
TrEMBL | K3Y944 | 1e-144 | K3Y944_SETIT; Uncharacterized protein | ||||
STRING | Si010736m | 1e-145 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 4e-39 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G050200.2.p |