PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Sevir.7G020600.3.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 736aa MW: 85465.6 Da PI: 5.7345

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.7G020600.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.6	3.6e-17	132	212	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 f n Y++ +GF v k +++k+ k t++C+k+ k++e++ + +++r++++ +rtgC +++vk+ +g+we++ +++eHnH+l+ Sevir.7G020600.3.p 132 FVNVYGQVTGFVVYKGRNYKH------RKITLQCNKSKKAKENEMR-QRKRKRNTIERTGCPMRVTVKLV-EGRWEIMAVQNEHNHPLS 212 7799*************99......5678*******9999.99*****************.**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-15	132	212	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-23	336	428	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.458	619	655	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0054	630	657	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 736 aa Download sequence Send to blast
MQKTSISEKN LEERYEIIVT SEHEAGKFGN GSAKESLHVP PFLLNGAGPG MLSEIQTADA 60 DEAFIQELEQ ENGNPILNDE PDDDLNECQE DTAEVEVDCD EDYFFPSPDE VEQARPPEVG 120 MVFATLDDAQ RFVNVYGQVT GFVVYKGRNY KHRKITLQCN KSKKAKENEM RQRKRKRNTI 180 ERTGCPMRVT VKLVEGRWEI MAVQNEHNHP LSSSPSLTRF FLSHKYMSEE EKNFSRILQE 240 SKIKPAKIME VFWRLRRKFK NIPVQKMAVN NLEQSDRLMK IENTDIESTL EHVRRLQKEQ 300 PGFYYAIKTD GDNTVRSIFW TDAQARLDYA LYGDFISFDT SYSTIEYNML FALLIGMNGH 360 GKATVFGWAL LEDERAETFS WLFRTFLDVM DGKKPSTILT HQDSAITKSI AEVFHTAFHR 420 FDMWHVLRKA RDELGSFMAH RGGMETELTH LVSNSVATEE FENGWQAMLE KYDAASNAHL 480 DLMYQTRLMW VPVYFKHVFS PFTQSTGCSK SKHSIFKDYV QQNDTIETFI SQYDIFQEEA 540 VSIEDGDRSQ STLKKPVYST RHPIERHAAE IYTTGMFLRF QKELLDASAF NAFEKERDVI 600 YTVKKALDYE DAEFLRDSFS VDVDLKTNTF NCICSKFERD GIVCCHVLRL FTQFSINMIP 660 EHYIKPRWTK KFREQELQKY CSEKIGSDIS QSSLRYAMIM NRMAESCAAV SKDPNQSKIF 720 LEEHERILWK LTDRE*

Sequence ? help Back to Top

Protein Sequence Length: 736 aa Download sequence Send to blast

MQKTSISEKN LEERYEIIVT SEHEAGKFGN GSAKESLHVP PFLLNGAGPG MLSEIQTADA  60
DEAFIQELEQ ENGNPILNDE PDDDLNECQE DTAEVEVDCD EDYFFPSPDE VEQARPPEVG  120
MVFATLDDAQ RFVNVYGQVT GFVVYKGRNY KHRKITLQCN KSKKAKENEM RQRKRKRNTI  180
ERTGCPMRVT VKLVEGRWEI MAVQNEHNHP LSSSPSLTRF FLSHKYMSEE EKNFSRILQE  240
SKIKPAKIME VFWRLRRKFK NIPVQKMAVN NLEQSDRLMK IENTDIESTL EHVRRLQKEQ  300
PGFYYAIKTD GDNTVRSIFW TDAQARLDYA LYGDFISFDT SYSTIEYNML FALLIGMNGH  360
GKATVFGWAL LEDERAETFS WLFRTFLDVM DGKKPSTILT HQDSAITKSI AEVFHTAFHR  420
FDMWHVLRKA RDELGSFMAH RGGMETELTH LVSNSVATEE FENGWQAMLE KYDAASNAHL  480
DLMYQTRLMW VPVYFKHVFS PFTQSTGCSK SKHSIFKDYV QQNDTIETFI SQYDIFQEEA  540
VSIEDGDRSQ STLKKPVYST RHPIERHAAE IYTTGMFLRF QKELLDASAF NAFEKERDVI  600
YTVKKALDYE DAEFLRDSFS VDVDLKTNTF NCICSKFERD GIVCCHVLRL FTQFSINMIP  660
EHYIKPRWTK KFREQELQKY CSEKIGSDIS QSSLRYAMIM NRMAESCAAV SKDPNQSKIF  720
LEEHERILWK LTDRE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.7G020600.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022684165.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	K3Y5L3	0.0	K3Y5L3_SETIT; Uncharacterized protein
STRING	Si009501m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-83	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Sevir.7G020600.3.p