PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB

Protein Properties

Length: 249aa MW: 27474.6 Da PI: 8.3112

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.6G246200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.6	2.6e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv ++k +G g+W++ ++ g+ R++k+c++rw +yl Sevir.6G246200.1.p 14 KGAWTKEEDDRLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	57.1	4.2e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Ed+l+v ++ +lG++ W++Ia++++ gRt++++k++w+++ Sevir.6G246200.1.p 67 RGNFTPDEDDLIVSLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.0E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.58	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.54E-29	13	108	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.4E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	4.22E-11	16	61	No hit	No description
PROSITE profile	PS51294	28	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-27	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	9.06E-13	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDDRLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TPDEDDLIVS LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIRRKLLARG 120 IDPVTHRPVA ADVGGVTTIS FHPPPPQQQL KPPPRCPDLN LDLCISPPCH QQEEEDDQPL 180 DVEVDLIKPV VVVKREVLQA GHGHGSRGAL CFGCSLGLQK GAPGCSCSDS HFLGLRAGML 240 DFRGLEMK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-28	13	116	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269\|PubMed:7920701}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.6G246200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF299185	1e-154	JF299185.1 Panicum virgatum R2R3-MYB transcriptional factor PvMYB4a mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004974147.1	1e-170	myb-related protein Zm38
Swissprot	P20025	1e-134	MYB38_MAIZE; Myb-related protein Zm38
TrEMBL	A0A368RPU4	1e-168	A0A368RPU4_SETIT; Uncharacterized protein
STRING	Si015081m	1e-165	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-89	myb domain protein 4

Link Out ? help Back to Top
Phytozome	Sevir.6G246200.1.p

Publications ? help Back to Top
Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701]