PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G243900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SRS
Protein Properties Length: 309aa    MW: 31480.5 Da    PI: 7.881
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G243900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702219.95.3e-681052483153
              DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 
                         +gt+sCqdCGnqakkdCah+RCRtCCksrgfdC thvkstWvpaakrrerqqql+++         ++ skr+r+++ ++++a+++++  +
  Sevir.6G243900.1.p 105 AGTISCQDCGNQAKKDCAHMRCRTCCKSRGFDCPTHVKSTWVPAAKRRERQQQLTTS------GGGAEPSKRPRDTQPSSTTATTTSS-GE 188
                         6899************************************************99886......34678999***98444444433333.34 PP

              DUF702  94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                         +++++ +  +++P+evsseavfrcvr++ vd++++e+aYqt+vsi+GhvfkGiL+d G++
  Sevir.6G243900.1.p 189 QQQQMAMVGERFPREVSSEAVFRCVRLGPVDEADAEVAYQTSVSIAGHVFKGILHDVGPD 248
                         44556677789***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.3E-62107248IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016235.4E-28109151IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.1E-22199247IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAGFPLGGGG GGGGHHHDGR GDHHHPHVNP SSSGSDSATA AAAAAAAYLY TTAAAAPRGG  60
GFQLWPHHPA QEHHHFYAPN IIRFADDPAA GSSRGGRGSA SGAGAGTISC QDCGNQAKKD  120
CAHMRCRTCC KSRGFDCPTH VKSTWVPAAK RRERQQQLTT SGGGAEPSKR PRDTQPSSTT  180
ATTTSSGEQQ QQMAMVGERF PREVSSEAVF RCVRLGPVDE ADAEVAYQTS VSIAGHVFKG  240
ILHDVGPDPS VAAGGGGYRH AAEGSSPSTA AAGEGSVAGP VSSSAVVMDP YPTPGPYGGA  300
PFFHGHPR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G243900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687730.0EU968773.1 Zea mays clone 324045 SHI mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974131.10.0protein SHI RELATED SEQUENCE 1
TrEMBLK3YM240.0K3YM24_SETIT; Uncharacterized protein
STRINGSi015301m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.11e-53Lateral root primordium (LRP) protein-related