PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G243900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | SRS | ||||||||
Protein Properties | Length: 309aa MW: 31480.5 Da PI: 7.881 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 219.9 | 5.3e-68 | 105 | 248 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 +gt+sCqdCGnqakkdCah+RCRtCCksrgfdC thvkstWvpaakrrerqqql+++ ++ skr+r+++ ++++a+++++ + Sevir.6G243900.1.p 105 AGTISCQDCGNQAKKDCAHMRCRTCCKSRGFDCPTHVKSTWVPAAKRRERQQQLTTS------GGGAEPSKRPRDTQPSSTTATTTSS-GE 188 6899************************************************99886......34678999***98444444433333.34 PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +++++ + +++P+evsseavfrcvr++ vd++++e+aYqt+vsi+GhvfkGiL+d G++ Sevir.6G243900.1.p 189 QQQQMAMVGERFPREVSSEAVFRCVRLGPVDEADAEVAYQTSVSIAGHVFKGILHDVGPD 248 44556677789***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.3E-62 | 107 | 248 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 5.4E-28 | 109 | 151 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 3.1E-22 | 199 | 247 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MAGFPLGGGG GGGGHHHDGR GDHHHPHVNP SSSGSDSATA AAAAAAAYLY TTAAAAPRGG 60 GFQLWPHHPA QEHHHFYAPN IIRFADDPAA GSSRGGRGSA SGAGAGTISC QDCGNQAKKD 120 CAHMRCRTCC KSRGFDCPTH VKSTWVPAAK RRERQQQLTT SGGGAEPSKR PRDTQPSSTT 180 ATTTSSGEQQ QQMAMVGERF PREVSSEAVF RCVRLGPVDE ADAEVAYQTS VSIAGHVFKG 240 ILHDVGPDPS VAAGGGGYRH AAEGSSPSTA AAGEGSVAGP VSSSAVVMDP YPTPGPYGGA 300 PFFHGHPR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G243900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968773 | 0.0 | EU968773.1 Zea mays clone 324045 SHI mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974131.1 | 0.0 | protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | K3YM24 | 0.0 | K3YM24_SETIT; Uncharacterized protein | ||||
STRING | Si015301m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1354 | 35 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 1e-53 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G243900.1.p |