PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G239700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 276aa    MW: 29391.8 Da    PI: 6.1804
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G239700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.7e-11104149454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er RRd++  +f  Lr  +P+      ++++Ka+ L  A+ YI++L
  Sevir.6G239700.1.p 104 SHVEAERHRRDKLHRRFCDLRAAVPNV-----TRMDKASLLADATAYISEL 149
                         699***********************8.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.681100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-13104161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-8104149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14104165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.58E-10104154No hitNo description
SMARTSM003531.5E-10106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDEHARPTSS TSNPPSPASF FSAAGNGGLV LEFPYTEVLE QWLMDDDDDN AQDQPPLEHG  60
AVSGDGGGSS ADLSSMNNNP PAAAATKRRG RKPGPSSGAG PAFSHVEAER HRRDKLHRRF  120
CDLRAAVPNV TRMDKASLLA DATAYISELR ARVEQLEVEA TRAALRKASP FLVVDDDGAA  180
PAAGSFGLEE DEKLEVRMVV GQESAALRLT TAARHRHATA RLMDALRSLD LPVQHACACR  240
VGGVIVQDAV VDVPTALRDE GRLRAALLHR LQHSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1698159263Transcription factor MYC2
5gnj_B4e-1698159263Transcription factor MYC2
5gnj_E4e-1698159263Transcription factor MYC2
5gnj_F4e-1698159263Transcription factor MYC2
5gnj_G4e-1698159263Transcription factor MYC2
5gnj_I4e-1698159263Transcription factor MYC2
5gnj_M4e-1698159263Transcription factor MYC2
5gnj_N4e-1698159263Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G239700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974091.11e-173transcription factor bHLH14
TrEMBLK3YJ221e-172K3YJ22_SETIT; Uncharacterized protein
STRINGSi014241m1e-172(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.13e-21bHLH family protein