PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G233700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 307aa    MW: 32883.8 Da    PI: 7.0708
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G233700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-09143190455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  Sevir.6G233700.1.p 143 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 190
                         8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.98E-11137194No hitNo description
SuperFamilySSF474594.06E-17137205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16139203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6143190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MANFSSHHSA LLLKMPAALT NGHSPNLSSL LFYGQNHGQG APANANAASG TAAAMAEDAS  60
LESSSAVVDT SPQGSASPMD RKRKATEDSA TLSSAHSKDC KQEGKSKRGK RPHKEAEEKS  120
TTDDEAPKGY IHVRARRGQA TDSHSLAERV RRERISERMR MLQALVPGCD KVTGKALILD  180
EIINYVQSLQ NQVEFLSMRI ASMSPVLYGF GLDSDGLHDH AQKMGGMIQE ALAMPGPVLS  240
QASPTPSQTI MDTTTTSSTP YSLQGQGAIS FSQDNGSNYL MQQAVGEPTR QELLNQLVFN  300
NMCSFQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G233700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353771e-180BT035377.1 Zea mays full-length cDNA clone ZM_BFb0058D24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974028.10.0transcription factor bHLH137
TrEMBLK3YIS00.0K3YIS0_SETIT; Uncharacterized protein
STRINGSi014139m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.28e-42bHLH family protein