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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sevir.6G233000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
NAC |
| Protein Properties |
Length: 228aa MW: 24057.4 Da PI: 10.2823 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.6G233000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 103.3 | 3.2e-32 | 20 | 160 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgk...rknr.atksgyWkat 86
lppGfrF+Ptdeelvv+yL++k+ g +l++ vi+ v d+y+++Pwd+p+ +a+e e yfF+ r + +g r at+sg+Wk
Sevir.6G233000.1.p 20 LPPGFRFRPTDEELVVQYLRRKAFGVPLPA-AVIPVVpDLYSLDPWDIPA--DASEGEKYFFAVRTAGAGSGCsksGGARaATASGRWKPA 107
79****************************.8999999***********4..4567799*****99988855411144566899******* PP
NAM 87 gkdkevlsk.....kgelvglkktLvfykgrapkge......ktdWvmheyrl 128
gk+k+v+ ++ lvg+k+tL+f + r++k++ + Wvmheyrl
Sevir.6G233000.1.p 108 GKEKPVVLPrpcggGSLLVGVKRTLTFVTRRKKKASapsdslAAGWVMHEYRL 160
*******99899877777**********66555554444555789******98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 228 aa
Download sequence Send
to blast |
MESAPVLVRH AGGVAALRQL PPGFRFRPTD EELVVQYLRR KAFGVPLPAA VIPVVPDLYS 60
LDPWDIPADA SEGEKYFFAV RTAGAGSGCS KSGGARAATA SGRWKPAGKE KPVVLPRPCG 120
GGSLLVGVKR TLTFVTRRKK KASAPSDSLA AGWVMHEYRL AAPLHKNGCR LAQAEGEWVV 180
CRVFQRSNRP RRRPAPAGAG HDAAASPTSS SASCVTDGSD QEEEVSS*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 2e-27 | 20 | 188 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_B | 2e-27 | 20 | 188 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_C | 2e-27 | 20 | 188 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_D | 2e-27 | 20 | 188 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_A | 2e-27 | 20 | 188 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_B | 2e-27 | 20 | 188 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_C | 2e-27 | 20 | 188 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_D | 2e-27 | 20 | 188 | 20 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT086571 | 7e-71 | BT086571.1 Zea mays full-length cDNA clone ZM_BFc0184N14 mRNA, complete cds. |
| GenBank | DQ245491 | 7e-71 | DQ245491.1 Zea mays clone 16115 mRNA sequence. |
| GenBank | DQ246095 | 7e-71 | DQ246095.1 Zea mays clone 16151 mRNA sequence. |
| GenBank | EU970906 | 7e-71 | EU970906.1 Zea mays clone 353721 NAC domain-containing protein 68 mRNA, complete cds. |
