PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.6G230900.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

M-type_MADS

Protein Properties

Length: 133aa MW: 15191.4 Da PI: 10.2557

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.6G230900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	73.1	2.4e-23	34	83	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqv fskRr g++ KA EL vLCda+va+++fs+ g+ly ++s Sevir.6G230900.1.p 34 RIEDRTSRQVRFSKRRRGLFNKARELAVLCDARVALVVFSPAGRLYKFAS 83 8***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	28.076	25	85	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.4E-29	25	84	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.22E-25	27	101	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-25	27	47	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.4E-24	34	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-25	47	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-25	62	83	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MEEEVAARRA ELELLQPEKA SKVKKKRGRV ELRRIEDRTS RQVRFSKRRR GLFNKARELA 60 VLCDARVALV VFSPAGRLYK FASADSSIEE IFGRHRDLPT TVNDLNIEAQ DSRINNNIQD 120 PSLIFICYGE TT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	4e-15	27	85	3	61	Myocyte-specific enhancer factor 2B
1tqe_Q	4e-15	27	85	3	61	Myocyte-specific enhancer factor 2B
1tqe_R	4e-15	27	85	3	61	Myocyte-specific enhancer factor 2B
1tqe_S	4e-15	27	85	3	61	Myocyte-specific enhancer factor 2B
6c9l_A	4e-15	27	85	3	61	Myocyte-specific enhancer factor 2B
6c9l_B	4e-15	27	85	3	61	Myocyte-specific enhancer factor 2B
6c9l_C	4e-15	27	85	3	61	Myocyte-specific enhancer factor 2B
6c9l_D	4e-15	27	85	3	61	Myocyte-specific enhancer factor 2B
6c9l_E	4e-15	27	85	3	61	Myocyte-specific enhancer factor 2B
6c9l_F	4e-15	27	85	3	61	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269\|PubMed:17951465}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.6G230900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU943151	5e-55	EU943151.1 Zea mays clone 1571160 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004974005.1	3e-77	MADS-box transcription factor 51
Swissprot	Q9XJ61	6e-27	MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBL	A0A368RR18	4e-76	A0A368RR18_SETIT; Uncharacterized protein
TrEMBL	K3YMP4	2e-75	K3YMP4_SETIT; Uncharacterized protein
STRING	Si015525m	3e-76	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30260.1	5e-24	AGAMOUS-like 79

Link Out ? help Back to Top
Phytozome	Sevir.6G230900.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SL,Lee S,Kim HJ,Nam HG,An G OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol., 2007. 145(4): p. 1484-94 [PMID:17951465]