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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sevir.6G230800.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
MIKC_MADS |
Protein Properties |
Length: 176aa MW: 19938.8 Da PI: 9.1851 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.6G230800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 84.4 | 6.6e-27 | 28 | 77 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rie+ + rqv fskRr g++KKA+ELSvLCda+va+++fs+ g+lye++s
Sevir.6G230800.1.p 28 RIEDRTSRQVRFSKRRCGLFKKAYELSVLCDAQVALVVFSPAGRLYEFAS 77
8***********************************************86 PP
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2 | K-box | 15.5 | 7e-07 | 127 | 163 | 32 | 68 |
K-box 32 qreqRhllGedLesLslkeLqqLeqqLekslkkiRsk 68
+ + ++++Ls+ e+++Le+ + ++l iR+k
Sevir.6G230800.1.p 127 NIVAQRAMEASVDELSMAEIRSLEETVTDALAAIRNK 163
444455677899***********************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 176 aa
Download sequence Send
to blast |
MERRVELDLL QQEKKGTKRK RGRVELRRIE DRTSRQVRFS KRRCGLFKKA YELSVLCDAQ 60 VALVVFSPAG RLYEFASADS SLGEVLDRYW DLANTINDLN IEARDSRVDR NIQEQQSFVG 120 SLPDQLNIVA QRAMEASVDE LSMAEIRSLE ETVTDALAAI RNKLRAKVVG LLPQA*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 1e-18 | 21 | 114 | 3 | 86 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-18 | 21 | 114 | 3 | 86 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-18 | 21 | 114 | 3 | 86 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-18 | 21 | 114 | 3 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-18 | 21 | 114 | 3 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-18 | 21 | 114 | 3 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-18 | 21 | 114 | 3 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-18 | 21 | 114 | 3 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-18 | 21 | 114 | 3 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-18 | 21 | 114 | 3 | 86 | Myocyte-specific enhancer factor 2B |
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