PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sevir.6G224800.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 402aa MW: 42299 Da PI: 5.7827

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.6G224800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.5e-09	211	258	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq Sevir.6G224800.1.p 211 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 258 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-16	205	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.78E-10	205	262	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.7E-16	207	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.301	207	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-6	211	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.0E-10	213	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MEGRAGGGRD YIASLLSSAP RLDFGALGAV PAMLDSAAAG ADGGEDCLER FCGDPGFAER 60 AARLSSFSGQ RFAGAAAAAA GLFGLPPPAP AASNGEFAGS REASSVSDPA SAMRDANAKK 120 RKAPAAAKGK GKEASAQAGE QKDPDAKRCK TEGAEGKDES PVKPKPEQAG SDSSVEDGGG 180 QKPGKGKNAK PVEPPKDYVH VRARRGQATD SHSLAERVRR ERISQRMKVL QDLVPGCNKV 240 IGKALMLDEI INYVQSLQRQ VEFLSMKLAT VNPLDFSNLP TLLQKDIFQA CGPSASSVFS 300 LESSSSGFPF SDQGDVFQSF VPNGLENQCG LNPLDLALSQ ATNAQYAFQD GTASTNLQQR 360 NFWEEDLQSV FHIDNGQSQE NGVSAQSFHG QLQAGHMKME F*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MEGRAGGGRD YIASLLSSAP RLDFGALGAV PAMLDSAAAG ADGGEDCLER FCGDPGFAER  60
AARLSSFSGQ RFAGAAAAAA GLFGLPPPAP AASNGEFAGS REASSVSDPA SAMRDANAKK  120
RKAPAAAKGK GKEASAQAGE QKDPDAKRCK TEGAEGKDES PVKPKPEQAG SDSSVEDGGG  180
QKPGKGKNAK PVEPPKDYVH VRARRGQATD SHSLAERVRR ERISQRMKVL QDLVPGCNKV  240
IGKALMLDEI INYVQSLQRQ VEFLSMKLAT VNPLDFSNLP TLLQKDIFQA CGPSASSVFS  300
LESSSSGFPF SDQGDVFQSF VPNGLENQCG LNPLDLALSQ ATNAQYAFQD GTASTNLQQR  360
NFWEEDLQSV FHIDNGQSQE NGVSAQSFHG QLQAGHMKME F*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.6G224800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973933.1	0.0	transcription factor bHLH78
TrEMBL	K3YHZ8	0.0	K3YHZ8_SETIT; Uncharacterized protein
STRING	Si013867m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-51	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sevir.6G224800.1.p