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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G222000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | LBD | ||||||||
Protein Properties | Length: 189aa MW: 20546.1 Da PI: 6.3872 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.4 | 5e-38 | 20 | 120 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca+dCvlapyfpa+qp+++a vh +FG+sn ++ll++lp +er +a+++++ eA++r++dPvyG++gvi +lqq+++ ++ Sevir.6G222000.1.p 20 RCAACKYLRRRCAPDCVLAPYFPASQPRRYADVHAVFGTSNATRLLQSLPVQERGRAADTMAAEARWRVQDPVYGCTGVIDRLQQEIRAVQ 110 6****************************************************************************************** PP DUF260 92 aelallkeel 101 +ela+++++l Sevir.6G222000.1.p 111 HELATTRAQL 120 *****99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.839 | 19 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-37 | 20 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MEVVDQQQLD YGGGSNNPRR CAACKYLRRR CAPDCVLAPY FPASQPRRYA DVHAVFGTSN 60 ATRLLQSLPV QERGRAADTM AAEARWRVQD PVYGCTGVID RLQQEIRAVQ HELATTRAQL 120 AVHAHRGAPP PPQATPQLMS LPPPPHQPLA AAVAVHAGAR GAVAVHEADD DEEPLMDPDE 180 FLDLDGRF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-33 | 21 | 124 | 12 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-33 | 21 | 124 | 12 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G222000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683529.1 | 1e-104 | LOB domain-containing protein 24 | ||||
Swissprot | P59467 | 1e-38 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
Swissprot | P59468 | 9e-39 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | K3YMP0 | 1e-104 | K3YMP0_SETIT; Uncharacterized protein | ||||
STRING | Si015521m | 1e-104 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 5e-41 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G222000.1.p |