PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G219400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 1098aa    MW: 122246 Da    PI: 7.0114
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G219400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3681.3e-21130231199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++   W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +
  Sevir.6G219400.1.p 130 FCKTLTASDTSTHGGFSVPRRAAERIfphldfsM-QPPA-QELQARDLHDSIWTFRHIYRGQPKRHLLTTGWSLFVSGKKLLAGDSVLFIR 218
                         99*****************************954.4444.49************************************************5 PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                         d   +++l+++++r+
  Sevir.6G219400.1.p 219 D--ARQQLLLGIRRA 231
                         4..566679999987 PP
2Auxin_resp118.65e-39256339183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s F+v+YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+++
  Sevir.6G219400.1.p 256 AAHAAANNSQFTVFYNPRASPSEFVIPFAKYQKAVYsNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNIQ 339
                         79*********************************989*******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-40120259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-38123245IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-17129219No hitNo description
SMARTSM010191.5E-19130232IPR003340B3 DNA binding domain
PROSITE profilePS5086311.448130232IPR003340B3 DNA binding domain
PfamPF023621.2E-19130231IPR003340B3 DNA binding domain
PfamPF065074.4E-34256339IPR010525Auxin response factor
PfamPF023098.5E-109761064IPR033389AUX/IAA domain
PROSITE profilePS5174527.0029791063IPR000270PB1 domain
SuperFamilySSF542772.75E-89831058No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1098 aa     Download sequence    Send to blast
MKLEKSGNQK KKEGKKNKKV NQELWYACAG PLVALPPAGS LVVYFPQGHS EQVAASMGKD  60
ADAKIPSYPN LPSKLICILN SVTMHADTDT DEVYARMTLQ PVSNVTQCDK ETLLASELAL  120
KQTRPQTEFF CKTLTASDTS THGGFSVPRR AAERIFPHLD FSMQPPAQEL QARDLHDSIW  180
TFRHIYRGQP KRHLLTTGWS LFVSGKKLLA GDSVLFIRDA RQQLLLGIRR ANRQPVNLSS  240
SVLSSDSMHI GILAAAAHAA ANNSQFTVFY NPRASPSEFV IPFAKYQKAV YSNQLSLGMR  300
FRMMFETEES GTRRYMGTIT GISDLDPVRW KNSQWRNIQV AWDEAAPSER RTRVSLWDIE  360
PVIAPFFIYP SPLFTAKRPR QPGITDDETA DMENLFKRTM PWFGEEIYKK DLNTQNNLVP  420
GLSLVQWMQQ NPSLTSTVVQ PELLNSLAGK PVQTLAAADM SRQISFQPQF LQQNNIQFNT  480
SLLPPQNQQT EQLAKVIATP NQSGSVIVSQ KVVQDCNPEQ KQHAITQPVQ GSQPMISAAQ  540
PQFVVQNQLQ QPQVILQAQP QQPQVILQAQ IQQQQPLVQN HTVLHGDLQQ AQLLQQQEPH  600
LQQQPQQVQQ SVQEQQQIKI QPVQVLNGTN VITQLSDHQM KIQLLKALQP QQPLIMEQQK  660
MILDLQHQMV NSNSQSAAQQ CAQVTTQAGG MHSSNTIQYP TQQKTQPHQP IQDFPRHAVS  720
VANPEIATSM GTRSLHVPGG VQLLKTEDVP SSSTSPPTNN NPVLLQSVPC SSKNQSLLTA  780
AKTPQSSAVV GPTLGQGMKP YESAQQMVMI PKGAEQKPVT RQDYVNNTPQ MDYLDTSSSA  840
TSVCLSQADG SLHQNFPPSS FNQHQLLRET VPDSEFEVTD PGNNFLFGVN IDGHLDSLNA  900
DALLANNFET EKYMDHMPGH GISNYISSKD SQQELSSSMI SHSFGVADIA FNSIDSSIND  960
APFLNRNSRP PAPAHQRIRT YTKVHKRGAV GRSIDINRYS GYDELKHDVA RMFGIEGQLS  1020
DQNRGGWKLV YEDHEKDVLL VGDDPWEDFV NCVRCIRILS PQEEMQMRLA SDFGDSFLHN  1080
QACSSSDGGH PWRVTGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-161336034388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G219400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973925.10.0auxin response factor 21
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLK3YFY70.0K3YFY7_SETIT; Auxin response factor
STRINGSi013155m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]