PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G217600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 160aa MW: 17675.7 Da PI: 7.2357 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.7 | 7e-14 | 27 | 77 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 g +GVr ++ +grW+AeIr+p++ r ++++g f+t +eAa a+ aa +++ge Sevir.6G217600.1.p 27 GWTGVRLRP-WGRWAAEIRVPYT---REKVWIGVFDTDKEAALAYGAAIFCFYGE 77 568******.**********876...5******************9999998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.5E-15 | 26 | 78 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.912 | 27 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-16 | 27 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-19 | 28 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-6 | 28 | 39 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.3E-8 | 29 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.13E-17 | 30 | 90 | No hit | No description |
PRINTS | PR00367 | 1.0E-6 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MARRGQAQRV GVQHHSAAAA RQQKRSGWTG VRLRPWGRWA AEIRVPYTRE KVWIGVFDTD 60 KEAALAYGAA IFCFYGEDLP RRRRFNLPAV PHPDIAEDVR HQLSVTDIKD IAKKHARDAL 120 QEEEEEAAAA GPSAGADADA PANTYHGHNP NDMDVDLSL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G217600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974847.1 | 1e-103 | ethylene-responsive transcription factor ERF018 | ||||
TrEMBL | A0A368RQJ2 | 1e-102 | A0A368RQJ2_SETIT; Uncharacterized protein | ||||
STRING | Si014944m | 3e-81 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5444 | 25 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 2e-18 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G217600.1.p |