PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G212600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | SBP | ||||||||
Protein Properties | Length: 402aa MW: 41509.7 Da PI: 8.504 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.2 | 3.7e-41 | 91 | 166 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dl+ ak+yh rhkvC +h+kap v+v+g+eqrfCqqCsrfh+l+efD++krsCrrrL +hnerrr++ Sevir.6G212600.1.p 91 RCQVEGCNVDLTGAKTYHCRHKVCAMHAKAPLVVVNGIEQRFCQQCSRFHQLHEFDQQKRSCRRRLTGHNERRRRP 166 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.2E-33 | 85 | 153 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.18 | 89 | 166 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.62E-39 | 90 | 169 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-32 | 92 | 165 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MEAASAAGGS GGSGSGSGGG DDHLHGLKFG KKIYFEDAGG SGSSGSGGSA SASDAPPPQP 60 LPPPSASPGR APGRRGRGAA GGASGSPAPA RCQVEGCNVD LTGAKTYHCR HKVCAMHAKA 120 PLVVVNGIEQ RFCQQCSRFH QLHEFDQQKR SCRRRLTGHN ERRRRPPAGP LASRYGRLAT 180 SFGEEPGRFR SFLLDFTYPR VPSSMRDGWP AARPGERVPP SIQWQASLDP HQHSAITGYG 240 AHSYGSHGSS SSGPPVFPGP ELPPGGCLAG VPADSSCALS LLSTQQWDTT QSAGHSRAAS 300 MPATAGFDGN PVAPSLMASS YIAPSPWTGS RGHAGGRDVP PQLPPDVPLD EVHSGSSSHH 360 GQFSGELELA LQGNRPAPAP RIDHGSTSTF DQASNTTDWS L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-31 | 82 | 165 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G212600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974838.1 | 0.0 | squamosa promoter-binding-like protein 14 isoform X1 | ||||
Swissprot | Q7EXZ2 | 1e-145 | SPL14_ORYSJ; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A368RNQ9 | 0.0 | A0A368RNQ9_SETIT; Uncharacterized protein | ||||
STRING | Si013870m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2527 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 7e-40 | squamosa promoter binding protein-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G212600.1.p |