PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G211800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 379aa    MW: 40214.1 Da    PI: 8.697
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G211800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.6e-13308353655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Sevir.6G211800.1.p 308 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 353
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945302352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-16305362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.01E-13306357No hitNo description
Gene3DG3DSA:4.10.280.101.7E-15307365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-13308358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-10308353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MYGSPVSKDL NLPVQPPMTS SGLLRYRSAP STLLGEVCED FLQPGPRAGS PDAGAADVFS  60
RFLADHQIRD KPPAPAPAPH THFPDTAALA TQQQQQQQMM FHSQQQQQQM AAVESGLYRT  120
VSSGMEAPTA GAGAGGSSLI RQSSSPAGFL NHLNMDNGYG GMLRAGMGVG FRNGASAAAA  180
ADSTAGGRLK GQLSFSSRQG SLMSQISEMG SEELGGSSPE GAGGGRGYIP GYPMSSGWED  240
SSSLMSESLS GMKRPRDSSE PGQSGLTQQF SLPKTSSEMA AIEKFLQFQD AVPCKIRAKR  300
GCATHPRSIA ERVRRTKISE RIRKLQELVP NMDKQTNTSD MLDLAVDYIK DLQKQVKVLN  360
ESRANCTCSA SKNPQYSG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G211800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973867.10.0transcription factor bHLH130 isoform X1
TrEMBLK3YI810.0K3YI81_SETIT; Uncharacterized protein
STRINGSi013950m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-55bHLH family protein