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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.6G210500.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
C2H2 |
Protein Properties |
Length: 420aa MW: 45119.7 Da PI: 6.2215 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.6G210500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 16.2 | 2.9e-05 | 244 | 263 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++Cp C k+F+r n++ H+
Sevir.6G210500.1.p 244 FSCPVCYKTFNRYNNMQMHM 263
89*****************9 PP
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2 | zf-C2H2 | 12.5 | 0.00044 | 330 | 350 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C +Cgk F k + ++H +++
Sevir.6G210500.1.p 330 CRKCGKAFAVKGDWRTHEKNC 350
*****************9987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 420 aa
Download sequence Send
to blast |
MEDPYTSFFK NPYYYYTTSF PAAPAPHLPP PLPPYNALYP GVSAAAPQYP ACFFQSQPTT 60 LPPLHDSPPS PPLREALPLL SQSPTRGHGA SRPHVAADSD DDAAADDFLR EVVVSSATHS 120 ARAPLFADLN CMPSCCDDGD PMDVEAAGAE STDDAAVALR IGLPAAPVNG CGGAEADLLS 180 GLSGRACGGM EPEEDEEECK VDTGAGDGDE VVPLGFASTP IGRLNKGQYW IPTPAQILIG 240 PTQFSCPVCY KTFNRYNNMQ MHMWGHGSQY RKGPESLRGV QPTAMLRLPC YCCAPGCRNN 300 IDHPRARPLK DFRTLQTHYK RKHGLKPFLC RKCGKAFAVK GDWRTHEKNC GKLWYCLCGS 360 EFKHKRSLKD HARAFGHGHG AFGCNIDGGA DGLDDDDEGA VSEIEQDCAA AAACGRSAR*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FP096907 | 0.0 | FP096907.1 Phyllostachys edulis cDNA clone: bphylf041f10, full insert sequence. |