PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G206000.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 690aa MW: 74940.4 Da PI: 6.2999 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.1 | 1.4e-31 | 281 | 337 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vk+se+prsYY+Ct+++Cpvkkkvers+ ++++ei+Y+g+H h+ Sevir.6G206000.6.p 281 EDGYNWRKYGQKQVKNSEHPRSYYKCTHPNCPVKKKVERSQ-KGHITEIVYKGSHSHP 337 8****************************************.9**************7 PP | |||||||
2 | WRKY | 104.4 | 6e-33 | 493 | 551 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+++d k v++tYeg+Hnhe Sevir.6G206000.6.p 493 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYAGCTVRKHVERASNDLKSVITTYEGKHNHE 551 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.32 | 275 | 339 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-28 | 277 | 339 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.93E-26 | 278 | 339 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-35 | 280 | 338 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-24 | 281 | 337 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.9E-37 | 478 | 553 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.15E-29 | 485 | 553 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.516 | 488 | 553 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-37 | 493 | 552 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-25 | 494 | 551 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 690 aa Download sequence Send to blast |
MAGTDNRRAL MEDWMLPSPS PRTVMSSFLN EEFSSCPFSS IFSDNGSSKP LDAIEKSKTL 60 VDSSVEETVQ NTKAPLQLES NLFRANQEST SHGGLAERMA ARAGFGVLKI DTSRVSSSAP 120 IRSPVTIPPG VSPRELLESP VFLPNAIAQP SPTTGKLPFL MPNNFKSMIS SVPKKAEDYF 180 HDDCAFSFQP ILMSKPPSFS TVDKGLSAVH QNQSLANYSQ ELSLQANTTA TKDETEENLV 240 KPSTCDSMSD NDHPSPADEQ EESEDNQNEE DSSVPVIAPA EDGYNWRKYG QKQVKNSEHP 300 RSYYKCTHPN CPVKKKVERS QKGHITEIVY KGSHSHPLPP PNRRPSVPSS HVNDLQADGS 360 ENFCSKPGHN TETSRAMAPN DHFQDVHSEV LERNLSGSLT TTEIADTCVM ESQEAVDVSS 420 TLSSNEKDER ATQCTIPSTY RGDDDETESK RRKMEVSAAA NTTTNAIDMA AMASRAVREP 480 RIVVQTTSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT YAGCTVRKHV ERASNDLKSV 540 ITTYEGKHNH EVPAARNSSG HPNSGSNAAP QGSNLHRRPE PAQPSIPQLN AAAAYGSLGL 600 PPQLSAASGG FSFGLLPPGM AVPVPSLGTF MPAPIPGHPP TMQGCTGLVV PRGEVKVNLE 660 EQSRLQVANG NAMAAYQQFM GRLPQGPQM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-36 | 281 | 554 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-36 | 281 | 554 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G206000.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012702098.2 | 0.0 | LOW QUALITY PROTEIN: probable WRKY transcription factor 2 | ||||
TrEMBL | K3YGK6 | 0.0 | K3YGK6_SETIT; Uncharacterized protein | ||||
STRING | Si013374m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 1e-120 | WRKY DNA-binding protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G206000.6.p |