PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G199100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 497aa    MW: 53810.6 Da    PI: 9.0667
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G199100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.11.3e-17214263255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h++ E+rRR++iN++f+ Lre+lP++    ++K +Ka+ L +++eYI+ Lq
  Sevir.6G199100.1.p 214 RSKHSATEQRRRSKINDRFQILREILPQN----DQKRDKASFLLEVIEYIRFLQ 263
                         889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-23211284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.888212262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-18212287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.36E-16214267No hitNo description
PfamPF000104.3E-15214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-13218268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MGLQGDKATH DFLSLYSAAK DSALPLLPPE SKPPPPSHQG FFLKTHDFLQ PLERPSSQSP  60
PPLPSRPAAE KQLRQHALPG GIGTFSISRA AAAAAADQPG AAVKQEQPPF AVWGQPDPRG  120
HPWSLPFAAR CVAVASARPQ PQQQPQRQPE RKAGGGFMDA GSRSSGGAGF DDDDGLAARR  180
EVSSSLKELS VRVETKGGSC SGSAGTDQLP NTPRSKHSAT EQRRRSKIND RFQILREILP  240
QNDQKRDKAS FLLEVIEYIR FLQEKVQKYE VSHPEWNQEN AKIMPWSNIY FRSSWKNSQN  300
KDEINGDMVS SDPTQVTKNG SSPRFPFAAK PEDHNNAGAF ETAPGAQELA ELKGCVPFKQ  360
AETPNNVTNT VASQQQAQLT NSSPSDDSAV PNGMLNNPEL AIDEGTISLS SQYSQGLLTT  420
LNLALQNSGI DLSQASISVQ INLGKRATKR SAPVSNSTSK DLINQASRDQ EIGHQLRSGD  480
GAREHTQATK RHKSDR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G199100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973763.10.0transcription factor BIM1
TrEMBLK3YHA40.0K3YHA4_SETIT; Uncharacterized protein
STRINGSi013622m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-52BES1-interacting Myc-like protein 2