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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.6G195300.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
Trihelix |
Protein Properties |
Length: 333aa MW: 36805.8 Da PI: 5.1402 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.6G195300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 57.4 | 3.8e-18 | 28 | 114 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergfer.spkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84
W++ e+l+Li+a+ e++++l+rg+lk+++Weev++ ++r + +qC++k+e+l+kry+ ++++ s + +f++
Sevir.6G195300.1.p 28 WSDPETLHLIDAYDERWTALGRGQLKAQQWEEVAADTaarcaatPGLAVQRkTGTQCRHKLEKLRKRYRTEAARPVT------SLWTFFRR 112
***********************************999999976555666659*****************9998875......58999999 PP
trihelix 85 le 86
++
Sevir.6G195300.1.p 113 MD 114
98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MMAAGAHEDS DEPPRRSALK KSAPAQPWSD PETLHLIDAY DERWTALGRG QLKAQQWEEV 60 AADTAARCAA TPGLAVQRKT GTQCRHKLEK LRKRYRTEAA RPVTSLWTFF RRMDQLERGP 120 NAASSAYPAA GGSPPAAASD EEEEEEEDEE ENQEDEEEEE EELIPRNNNT RSINGIIREF 180 GSGLAPRHPQ LQLQQQQPPP PPPSITPSTA PPRKRVAYEA FQAKAAAAAA AAVAADKAKE 240 EEVELVRRRP SGPGGASAQL SAVLRDFSDG VMRLERRRME MQWEIERGWQ ETEARHAQML 300 QDAQRQLRDA IAAACSLPPK KARRDYGSSG DS*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT040453 | 1e-112 | BT040453.1 Zea mays full-length cDNA clone ZM_BFc0095C18 mRNA, complete cds. |
GenBank | EU954325 | 1e-112 | EU954325.1 Zea mays clone 1462507 hypothetical protein mRNA, complete cds. |
GenBank | KJ727853 | 1e-112 | KJ727853.1 Zea mays clone pUT5898 trihelix transcription factor (THX8) gene, partial cds. |