 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sevir.6G194200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 281aa MW: 29637.8 Da PI: 4.5862 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.6G194200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.2 | 1.6e-19 | 55 | 108 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++++q+++Le+ Fe ++++ e++++LA+ lgL+ rqV vWFqNrRa++k
Sevir.6G194200.1.p 55 KKRRLSTDQVRALERSFETENKLEPERKARLAQDLGLQPRQVAVWFQNRRARWK 108
45689************************************************9 PP
|
| 2 | HD-ZIP_I/II | 134.6 | 3.5e-43 | 54 | 146 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrls++qv++LE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal++++++L++++++L +e+
Sevir.6G194200.1.p 54 EKKRRLSTDQVRALERSFETENKLEPERKARLAQDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDALRADHDALRRDKDTLIAEI 144
69**************************************************************************************999 PP
HD-ZIP_I/II 92 ke 93
ke
Sevir.6G194200.1.p 145 KE 146
87 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 281 aa
Download sequence Send
to blast |
MKRPSGAVSG GGGGSPGLLP IVQSDDGFGG VGVEEADEDM VLCSGGVGAC GGGEKKRRLS 60
TDQVRALERS FETENKLEPE RKARLAQDLG LQPRQVAVWF QNRRARWKTK QLERDYAALR 120
HSYDALRADH DALRRDKDTL IAEIKELKAK LGDEDAAASF SSVKEEPAAS DVEPPAAAAA 180
MAAQGSSDSD SSGVVNDAEM APEKAHPPAA AAGAEAVVPC GVASSLALHH GEVFFHGHLL 240
KVEDDEAAFL GDDDAACGGF FADLQPPSLP WWTEPTEHWA *
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 79 | 85 | ERKARLA |
| 2 | 102 | 110 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
